Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4200 ATGTTTAACACCAACAACACTTTCTCTTCACACCCGTCTACCTCCGACACATCATTGCCGAATTCAGAGGGTTCTTATGGGACGTTAGTTACCAACGATGAGGTACGGTTAGCTGTGAGTACCCCGAAGAAGCGTGCAGGGAGGAAAAAATTCAAGGAGACTCGCCACCCGGTATATAGGGGCGTGAGGAAGAGGAACTTGGATAAATGGGTGTGTGAAATGAGAGAGCCTAACAAAAAGACTAAGATTTGGCTAGGGACTTTTCCAACAGCCGAAATGGCAGCCCGAGCACATGATGTTGCCTCAATGGCATTGAGGGGCCGTTACGCCTGTCTCAACTTTGCTGACTCGGCGTGGCGGCTCCCTAAACCTGCCACCACACAGGCAAAAGATATACAAAAGGCGGCTGCACTAGCCGCCGAGGCTTTTAGACCAGACAAGACTTTAAAGACTAATGATATTGAAATGGATGTAATAACTAATAATATTGAAATGGATGTAGGTTCCTCAGCCACAGAGGAGCAGAGTATGGTTTGTATGGAAGAGCATGAAGAGGGAGTGATGAACATGCCAGAGTATTTTAGGGATATGGCGCTAATGTCCCCTACATATAGCTTTGGTTATCATGGGTATGAAGATATTCATGTAGAAGACTTTCAAGATGAAGAGGATTTTAAAAAATGGTTTGCAACCATATGA 699 0.4521 MFNTNNTFSSHPSTSDTSLPNSEGSYGTLVTNDEVRLAVSTPKKRAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVASMALRGRYACLNFADSAWRLPKPATTQAKDIQKAAALAAEAFRPDKTLKTNDIEMDVITNNIEMDVGSSATEEQSMVCMEEHEEGVMNMPEYFRDMALMSPTYSFGYHGYEDIHVEDFQDEEDFKKWFATI* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4200 232 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 230 - -
Tpr2g4200 232 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Tpr2g4200 232 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Tpr2g4200 232 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Tpr2g4200 232 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Tpr2g4200 232 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Tpr2g4200 232 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Tpr2g4200 232 MobiDBLite consensus disorder prediction 1 23 - -
Tpr2g4200 232 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Tpr2g4200 232 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 230 IPR045277 GO:0003700
Tpr2g4200 232 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4200 Tpr-Chr2 44936724 44938852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4200 36 221 AP2-EREBP Transcription Factor Family AT5G51990 51.546 8.74e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g4200 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4200 - K09286 mtr:MTR_6g465460 282.722