Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4199 ATGTTTATTAGTAAAAACTCTCCTTATTCACATCTTATTTCTTCACAAGATTCTGATGGGGAGATGCGGTTAGCCGCGAGTTGTCCCAAGAAGCGAGCAGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGGGGTGTGAGGAAGAGGAATTTAGATAAATGGGTTTGTGAAATGAGGGAGCCTAACAAAAAGACTAGGATTTGGCTAGGGACTTTTCCAACGGCCGAGATGGCAGCCCGAGCCCACGATGTTGCGGCCTTGGCATTGAGGGGCCGCTACGCTTGTCTCAATTTCGCAGACTCAGTGTGGCGTCTCCCTATACCTGCGACATCTGAGACAAAAGATATTCAAAAGGCAGCTACAGAAGCGGCCGAGGCTTTTAGACCTGAAAAAACTTTAAAGACTAATGACATTGAAACAGTTATAGCCGTTGTCGCGGCAAAGGAGTTGAGTATGTTTGTTTCGGAAGTGGAAACGGTTATAGCTGTTGTTGCCGCAAAGGAGTTGAATATGTTTGTTGTGGACGTGGCGGAAGAAGAGGAGGAAGATATGCCGGATTTGTGGAGGAATATGGTGCTAATGTCCCCTACACATAGCTTGGAGTATGACTATGAAGATATTGATGTAGGTGAATTTGAAGATGTATCACTATGGAACTTTTAA 672 0.4524 MFISKNSPYSHLISSQDSDGEMRLAASCPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAALALRGRYACLNFADSVWRLPIPATSETKDIQKAATEAAEAFRPEKTLKTNDIETVIAVVAAKELSMFVSEVETVIAVVAAKELNMFVVDVAEEEEEDMPDLWRNMVLMSPTHSLEYDYEDIDVGEFEDVSLWNF* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4199 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 218 IPR045277 GO:0003700
Tpr2g4199 223 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Tpr2g4199 223 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Tpr2g4199 223 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Tpr2g4199 223 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Tpr2g4199 223 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 6 218 - -
Tpr2g4199 223 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Tpr2g4199 223 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Tpr2g4199 223 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Tpr2g4199 223 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4199 Tpr-Chr2 44917948 44918906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4199 15 223 AP2-EREBP Transcription Factor Family AT5G51990 54.245 8.99e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr2g4199 AP2 7.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4199 - K09286 mtr:MTR_6g465460 289.656