Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4198 ATGTTTTTTCTATATATAACACACCATACTCTTGACTCTCTTAACACCAACCAACTCAATCTTCAACACATACACATGTTTACAACTAACAACTCTTCCAATTCACCCCCTTCCTCAATACCTTCATCTTCCTATGAAGGCTCTCATGGGATGTTAGTATCCAACGAGGAGATGCGTCTAGCAGAGAGTTGCCCAAAGAAGCGTGCAGGGAGGAAAAAGTTCAAGGAAACTCGCCATCCGGTGTATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACTGCCGAGATGGCAGCCCGGGCCCACGATGTTGCTGCACTGGCATTGAGGGGCCGTTACGCCTGTCTCAACTTTGCAGACTCTGTTTGGAAGCTCCCTAAACCTGCCACCACTCAAACAAAAGATATACAAAAGGCTGCTGCACAAGCCGCTGAAGCATTCAGACCAGACCAAAATTTAATGACTAGTGATGTTATCACGGCTGAAGCTTCGGCCACTGCAGAGGAGCAGAGTATGATTTGTATGGAAGAGGGGGAAGAGGAAGTGATGAGCATGCCTGAGTTGTGGAGGAATATGGCGCTAATGTCCCCTACACATAGCTTTGAGTATCAAGAGTATGAAGATATGGATGTAGAAGACTTTCAAGATGAAGAGGATTTTAAAAAAAGGTCCGTAACCATGACTTGGGTTGCGACATCAAAGTTTTTATGTCTCTGCAACCGCAACAGTACCATGATTGGAGTCCATTAG 807 0.4523 MFFLYITHHTLDSLNTNQLNLQHIHMFTTNNSSNSPPSSIPSSSYEGSHGMLVSNEEMRLAESCPKKRAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRYACLNFADSVWKLPKPATTQTKDIQKAAAQAAEAFRPDQNLMTSDVITAEASATAEEQSMICMEEGEEEVMSMPELWRNMALMSPTHSFEYQEYEDMDVEDFQDEEDFKKRSVTMTWVATSKFLCLCNRNSTMIGVH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4198 268 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Tpr2g4198 268 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Tpr2g4198 268 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 26 248 IPR045277 GO:0003700
Tpr2g4198 268 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Tpr2g4198 268 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Tpr2g4198 268 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Tpr2g4198 268 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 26 248 - -
Tpr2g4198 268 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Tpr2g4198 268 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Tpr2g4198 268 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4198 Tpr-Chr2 44878109 44881869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4198 59 212 AP2-EREBP Transcription Factor Family AT5G51990 59.281 8.30e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g4198 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4198 - - mtr:MTR_6g465460 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0703 1 5964446 5965875 Tpr2g4198 2 44878109 44881869 ECH
Tpr2g4198 2 44878109 44881869 Tpr2g4198 2 44878109 44881869 ECH