Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4197 ATGGTATTCACTAGTAACAACAACTCTTCCTTTTCATACTCAATTTCATCAAAAGATTCTTCTTTCCACACATCATCACCGGACTCTGAGCTCCGATTAGCGGCGAGTAGTCCCAAGAAACCGGCAGGGAGAAAGATATTCAAAGAAACTCGCCACCCGGTATACCGGGGTGTGAGGAAGCGGAACTTAGATAAATGGGTTTGTGAAATGAGAGAGCCAAACAAAAAGACTAGAATTTGGCTAGGAACTTTTCCAACCGCCGAGATGGCAGCCCGAGCACACGATGTTGCGGCAATGGCATTGAGAGGTCGCTATGCCTGTCTCAATTTCGCCGACTCAGTGTGGCGGCTCCCTATTCCTATAACCTCTAATACAAAAGATATTCAAAAGGCAGCTACCGAAGCCGCTGAGGCTTTTAGACCAGAAAAGATTTTAATGACAAACGACATTGACACCATTGACACCGTTGTAGCTGTCATCGCTGCAAAGGAGCTGAGTATGTTTTGTGTGGAAGAGCAAGACGACGAAGAACTGTTGAATATTCCAGATTTTTTTAGTAATATAGCACTAATGTCCCCTGCACATAGTTTTGAGCATGAGTATGAAGAATTCGAAGACTTTCAAGATGATGAGGATTTAAAAAAAATGGATGTTACCATTACCTGTGTTGTGACTATAATTGGAATTCATTCGCCAGATTTCACCGTGATAACAAGGACTGTGGTCGTTGCCGTGTCTGTGAACCCTGCCTTTTTATGTCTGGTTTATTGGTTTTCTTCTTGGCGAGGAAAGGCGCAAAAGAATAATGAATGA 813 0.4305 MVFTSNNNSSFSYSISSKDSSFHTSSPDSELRLAASSPKKPAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPITSNTKDIQKAATEAAEAFRPEKILMTNDIDTIDTVVAVIAAKELSMFCVEEQDDEELLNIPDFFSNIALMSPAHSFEHEYEEFEDFQDDEDLKKMDVTITCVVTIIGIHSPDFTVITRTVVVAVSVNPAFLCLVYWFSSWRGKAQKNNE* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4197 270 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Tpr2g4197 270 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 222 IPR045277 GO:0003700
Tpr2g4197 270 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 6 222 - -
Tpr2g4197 270 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Tpr2g4197 270 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Tpr2g4197 270 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tpr2g4197 270 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Tpr2g4197 270 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Tpr2g4197 270 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Tpr2g4197 270 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4197 Tpr-Chr2 44865134 44867863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4197 6 213 AP2-EREBP Transcription Factor Family AT4G25470 53.052 9.08e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g4197 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4197 - K09286 mtr:MTR_6g465460 340.887