Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4196 ATGGTATTCACTAGTAACAACAACTCTTCCTTTTCATACTCAATTTCATCAAAAGATTCTTCTTTCCACACATCATCACCGGACTCTGAGCTCCGATTAGCGGCGAGTAGTCCCAAGAAACCGGCAGGGAGAAAGATATTCAAGGAAACTCGCCACCCGGTATACCGGGGTGTGAGGAAGCGGAACTTAGATAAATGGGTTTGTGAAATGAGAGAGCCAAACAAAAAGACTAGAATTTGGCTAGGAACTTTTCCAACCGCCGAGATGGCAGCCCGAGCACACGATGTTGCGGCAATGGCATTGAGAGGTCGCTATGCCTGTCTCAATTTCGCCGACTCAGTGTGGCGGCTCCCTATTCCTATAACCTCTAATACAAAAGATATTCAAAAGGCAGCTACCGAAGCCGCCGAGGCTTTTAGACCAGAAAAGATTTTAATGACAAACAACATTGACACCGTTGTAGCTGTCATTGCTGCAAAGGAGCTGAGTATGTTTTGTGTGGAAGAGCAAGACGATGAAGAACTGTTGAATATTCCAGATTTTTTTAGGAATATAGCACTAATGTCCCCTGCACATAGTTTTGAGCATAACTATGAAGATTTTGAAGACTTTCAAGATGATGAGGATTTTAAAACAATGTCTGTTACCATTACCTGTGTTGTGACTGCAAATGGAATCCATTCACCAGATTTCACCGTGATAACAAGGACTGTGGTCGTTGCCGTGACTGCGAACCAAGCTCTTTTATGTCTGGTTTATTGGTTTTCTTCTTGGCAAGGAAAGGTGCAAAAGAATAATGAATGA 804 0.4291 MVFTSNNNSSFSYSISSKDSSFHTSSPDSELRLAASSPKKPAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPITSNTKDIQKAATEAAEAFRPEKILMTNNIDTVVAVIAAKELSMFCVEEQDDEELLNIPDFFRNIALMSPAHSFEHNYEDFEDFQDDEDFKTMSVTITCVVTANGIHSPDFTVITRTVVVAVTANQALLCLVYWFSSWQGKVQKNNE* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4196 267 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tpr2g4196 267 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Tpr2g4196 267 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Tpr2g4196 267 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Tpr2g4196 267 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Tpr2g4196 267 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Tpr2g4196 267 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Tpr2g4196 267 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 6 218 - -
Tpr2g4196 267 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Tpr2g4196 267 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 218 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4196 Tpr-Chr2 44861505 44863529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4196 6 209 AP2-EREBP Transcription Factor Family AT4G25470 53.302 1.03e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr2g4196 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4196 - K09286 mtr:MTR_6g465460 355.525