Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4152 ATGGATCCTAATGGTTCTATTGATGATAAGTGTGACAATAGACTCTACATTGGCAATCTTGATCTTAGAATTACCGAAGCTGCTCTACTCAAAATGTTTAATCCATATGGAAAGATAGTGTCCGAGGACTTCCTGTGGCACACTCGTGGCCCAAAACGCGGGGAACCACGTGGTTTTGCTTTTGTTCAGTATAGCACAAAAGAGGAAGCAATATTGGCCAAGGAGAAAATGCACGGGAAGCTAGCTTGCGGCCGGCCATTGGTTGTTCGCCTTGCAAGTGAGAGATATGCACTAGAAACACCCTCTAGCTCTACAAAAGCAGTTGGTGAAGGGCACAAGTTGCATCTCACTGGCGGTGGCACGGGACAGACGAGTCGTAGTGCGAAAATAGCTGCAATAAAGAACAAATTGAAGTCCTTAGAGGAAGATAACTCTAGGACCAAGAAGCAGAAGCAGAGTGACAATATATCTTGA 474 0.4515 MDPNGSIDDKCDNRLYIGNLDLRITEAALLKMFNPYGKIVSEDFLWHTRGPKRGEPRGFAFVQYSTKEEAILAKEKMHGKLACGRPLVVRLASERYALETPSSSTKAVGEGHKLHLTGGGTGQTSRSAKIAAIKNKLKSLEEDNSRTKKQKQSDNIS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4152 157 SUPERFAMILY RNA-binding domain, RBD 7 97 IPR035979 GO:0003676
Tpr2g4152 157 PANTHER RNA-BINDING PROTEIN 18-RELATED 5 154 - -
Tpr2g4152 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Tpr2g4152 157 Coils Coil 130 150 - -
Tpr2g4152 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Tpr2g4152 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 154 - -
Tpr2g4152 157 MobiDBLite consensus disorder prediction 100 157 - -
Tpr2g4152 157 CDD RRM_RBM18 14 93 IPR039157 -
Tpr2g4152 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Tpr2g4152 157 MobiDBLite consensus disorder prediction 135 150 - -
Tpr2g4152 157 Gene3D - 10 107 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4152 Tpr-Chr2 44244210 44247148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4152 15 95 Eukaryotic Initiation Factors Gene Family AT1G71770 39.506 3.16e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4152 K24527 - gmx:100806572 253.062