Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4107 ATGTTTCGCTTGTTCTTATTTGCTTTTATCATTCCCTTTGTGATGTTGAAATTTGATGAAGCTAATGCTCAACTTTACAAAAAAGTGGGAAATCAAATCTTACCTTATTCGACAATATTTGTCGATCCATCCGGCCGAGACGGGAGTTTCTTAACCATTCAATCTGCCATTGATTCGATACCTTCGCACAATGATCGCTGGATCGCAATTAGAGTGAAGGCTGGCACTTATAGAGAAAAAATAGGTATTCCAAGAGAGAAACCTTACATTATATTGAAAGGAGCAGGAAAGAGAAAAACTTTTGTTGAGTGGAATGATCATAGTTCAACCGATCAAAGTCCTACTTTTACATCATTGGCAAATAATACTGTTGTCAGAACCATAAGTTTCAGGAATACATACAACGATGATAATAACGGTGTCCATGTAGCTGCTGTAGCTGCAATGGTAAGTGGTGATCAGAGCTATTTTTACAGAGTTGGTTTCTATGGTTATCAAGACACTTTGTGGGACGATAGAGGAAGACATTATTACAAGCTTTGTACCATACAAGGTGCAATTGATTTTATCTTTGGTGAAGGTCAATCTTTCTTCGAGAGGTGCGCCATATCTGTTATTGGTGGTGGTTATATAACAGCACAAGGTAGAGATGATGCAAATGAACCAGGAGGGTTTGTTTTCAAAGATTGTGTTGTGTTTGGAAGTGCAACAACTTATTTGGGAAGGCCTTGGAGAAAATATGCTAGAGTCTTATTTTTTAATTCCAATCTTACCAACATTGTAGAACCTAGTGGTTGGAACACATGGAATTCTGAAGGCAATGAGGAACTAACAACATTTGCAGAGTATGGTAATTTTGGACCTGGTGCTGATACATCCAAGAGAGTGAGTTGGGCTAAGAAATTGGATTTAGCAACTATTGAACAAATGTCAAGTTTGAACTTCGTCAACACACCAGAACAATGGATTGGTACTCAACCATTCTAA 987 0.3789 MFRLFLFAFIIPFVMLKFDEANAQLYKKVGNQILPYSTIFVDPSGRDGSFLTIQSAIDSIPSHNDRWIAIRVKAGTYREKIGIPREKPYIILKGAGKRKTFVEWNDHSSTDQSPTFTSLANNTVVRTISFRNTYNDDNNGVHVAAVAAMVSGDQSYFYRVGFYGYQDTLWDDRGRHYYKLCTIQGAIDFIFGEGQSFFERCAISVIGGGYITAQGRDDANEPGGFVFKDCVVFGSATTYLGRPWRKYARVLFFNSNLTNIVEPSGWNTWNSEGNEELTTFAEYGNFGPGADTSKRVSWAKKLDLATIEQMSSLNFVNTPEQWIGTQPF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4107 328 SUPERFAMILY Pectin lyase-like 36 316 IPR011050 -
Tpr2g4107 328 Gene3D - 36 327 IPR012334 -
Tpr2g4107 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 327 - -
Tpr2g4107 328 ProSitePatterns Pectinesterase signature 2. 183 192 IPR033131 -
Tpr2g4107 328 PANTHER PECTINESTERASE 10-RELATED 3 327 - -
Tpr2g4107 328 Pfam Pectinesterase 47 310 IPR000070 GO:0030599|GO:0042545
Tpr2g4107 328 ProSitePatterns Pectinesterase signature 1. 64 83 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4107 Tpr-Chr2 43581646 43587159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4107 2 275 Carbohydrate Esterase AT2G19150 42.756 9.87e-74 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4107 - - gmx:100819252 420.624