Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4091 ATGGCGGGTGCTACCGGAAAAACTCTCTTCACTCTCTCTTCTTCTCTCACTACACGCATTTCACGTCATGGAAACCGTTTCTCATTCCTCACACTCTCAAATCCACTAACCATTCTTCCACGATTCAGACCTCTCTGTTCCATAACCGCCACACCCGAACCCTTATTAGACACTGACACAGAAAAACACTCGATTCTTCTCGAGAAGCTAAGAGTTAGACACCTAAAAGGAACTAGTAGTAGTAGTGGTACGAAAGTTTCTGAAATTGTGAAGAAATCTGATGTGAAGAAGAAGGTTGTTGTTGTTGATGAAGTTGTTGAGAGTTTTGATGAATTGGGAATTAGTGATGAAGTTATGGGTGCTGTTAAAGAAATTGGTATTGAAGTTCCTACTGAGATTCAGTGTATTGGTATTCCTGCTATTTTGGATGGTAAAAGTGTTGTTTTAGGGTCTCATACTGGTTCTGGAAAAACTCTTGCTTATTTGCTTCCACTTGTTCAGTTGCTAAGACGGGATGAGCAATTGAACGGAATAGTGCTGAAGCCCAAGCGTCCCCGAGCTGTTGTGCTATGTCCTACAAGGGAGTTGTCTGAGCAGGTTTTCCGAGTTGCTAAATCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGCGGTGGCCGTCTTAGGCCTCAGGAGGATTCACTTAGTAACCCTGTCGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACATATTGAGGAGGGGAATATGGTATACGGTGACATCCAATACGTGGTATTAGATGAGGCTGACACGATGTTTGATCAGGGCTTTGGTCCTGATATTCGCAAATTCCTGGCCCCATTAAAACACCGTGCTTCAAAACCTGACAGCCTAGGTTTCCAGACTGTTTTGGTCACTGCGACCATGACAAAGGCTGTGCAAAGTCTGGTTGATGAGGAGTTTCAAGGTATTGTCCATTTGCGCACATCCACGTTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTCTTAAACTTTCTGGTTCTGAGAACAAGATGGATGCATTACTTCAGGTATTAGAGCCAAGTCTTGCAAAGGGTAACAGGGTAATGGTTTTCTGCAACACATTAAATTCTAGCCGTGCTGTGGATCACTTTCTTGGTGAAAATCAGATTTCTACCGTGAATTACCATGGAGAGGTACCGGCGGAGGAAAGGGTTGAAAACCTCAACAAGTTTAAGAGTAACAGTGAAGATTGCCCTACATTGGTTTGCACGGACTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTATCATGTTTGACTTCCCTTTGAATTCTATCGATTACCTCCATCGCACAGGCAGAACTGCTCGTATGGGAGCAAAAGGTAAAGTAACAAGTTTGGTTACTAAAAAGGACTATAGCTTGGCAACCAAAATAGAGGAGGCAATAAGAAAGAATGAGAGTTTGGAGGCTATCACTAAAGAAAGTGTCCGAATGGACGTAACCAGGAACCAAATCACTGAGCAGAGAAGAAAGAACAAAAATGTGTTTAAAACTTCAAAAGTTAGGGACAAATCTGATTCTCGTGCAAGTCCTGTGAATACCAGGTCAGGTAATAGGGACAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCAGGTAGTAGGGATAAATCTGATTCTCGTACCCGTTCTGAGAATACCAGGTCAGGTAGTAGGGACAAATCTGATTCTCGCACCCGTTCTGTGAATACCAGGTCAGGTAGTAGGGACAAATCTGATTCTCGCACCCGTTCTGTGAATACAAGGTCAGGTAGTAGGGACAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGTCAGGTAGTAGGGATAAATCTGATTCTCGCACCCGTTCTGAGAATGCCAGGCCAGGTACGAAGACAGGATTTCCTGTTTCAAAACCTGTAAAATCTTCCAATACAGGTAGCTTCAAAAAAGCTTCTTCAGAGAATAAGCGAAAGGATAAAAGGACCACTGCCACCAAATCTACAGATTCTAAACTTAGTGTTGTTGGGTTTAGGGGGCGGAATGCATCATCCTCAGATAAGAGACAAACAAATTAG 2115 0.4345 MAGATGKTLFTLSSSLTTRISRHGNRFSFLTLSNPLTILPRFRPLCSITATPEPLLDTDTEKHSILLEKLRVRHLKGTSSSSGTKVSEIVKKSDVKKKVVVVDEVVESFDELGISDEVMGAVKEIGIEVPTEIQCIGIPAILDGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGIVLKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLSNPVDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDQGFGPDIRKFLAPLKHRASKPDSLGFQTVLVTATMTKAVQSLVDEEFQGIVHLRTSTLHKKISSARHDFLKLSGSENKMDALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAEERVENLNKFKSNSEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDYSLATKIEEAIRKNESLEAITKESVRMDVTRNQITEQRRKNKNVFKTSKVRDKSDSRASPVNTRSGNRDKSDSRTRSENTRSGSRDKSDSRTRSENTRSGSRDKSDSRTRSVNTRSGSRDKSDSRTRSVNTRSGSRDKSDSRTRSENTRSGSRDKSDSRTRSENARPGTKTGFPVSKPVKSSNTGSFKKASSENKRKDKRTTATKSTDSKLSVVGFRGRNASSSDKRQTN* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4091 704 Gene3D - 336 562 IPR027417 -
Tpr2g4091 704 SMART ultradead3 126 335 IPR014001 -
Tpr2g4091 704 MobiDBLite consensus disorder prediction 680 704 - -
Tpr2g4091 704 MobiDBLite consensus disorder prediction 506 532 - -
Tpr2g4091 704 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 32 537 - -
Tpr2g4091 704 Pfam Helicase conserved C-terminal domain 350 461 IPR001650 -
Tpr2g4091 704 MobiDBLite consensus disorder prediction 541 638 - -
Tpr2g4091 704 CDD SF2_C_DEAD 338 470 - -
Tpr2g4091 704 CDD DEADc 118 317 - -
Tpr2g4091 704 Gene3D - 70 326 IPR027417 -
Tpr2g4091 704 Pfam DEAD/DEAH box helicase 131 313 IPR011545 GO:0003676|GO:0005524
Tpr2g4091 704 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
Tpr2g4091 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 473 IPR027417 -
Tpr2g4091 704 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 325 IPR014001 -
Tpr2g4091 704 SMART helicmild6 379 461 IPR001650 -
Tpr2g4091 704 MobiDBLite consensus disorder prediction 505 704 - -
Tpr2g4091 704 MobiDBLite consensus disorder prediction 639 663 - -
Tpr2g4091 704 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 502 IPR001650 -
Tpr2g4091 704 MobiDBLite consensus disorder prediction 664 679 - -
Tpr2g4091 704 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 32 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4091 Tpr-Chr2 43436987 43445737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4091 104 483 Eukaryotic Initiation Factors Gene Family AT3G19760 28.646 5.78e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4091 - - mtr:MTR_6g039840 1015.76