Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4090 ATGAAACGAAGAATCAGAAACTTTCTAAGCCTATGTTTTTCATCTCTAAACTCTCAAAATCACCACCAACGACTCTCAAAATCACTACAATCCACATCATCTTTTCAAAACTCAACAACTTTCTCAACATTTTCCAAAACCCAAAGAGATTCAATGATTTTCGAAAAGTTCAAAGAAAGACAACTCAAAGGGTCATCAAAGGGTGAGATAAAAGATTCATCTTTTTCAGTCCCATCATGTTTTGACACCAATGTTGAGAAAATGGCTCAAAAGGGTTTGAAAAATGAGAGTGAAAATAATACTATGGTTGTTGGGAATTTTAAGGAGTTGGGTTTGAGTGATGTGCTTGTTGAGGTTATTGAAGAGATTGGTGAGTTTGTACCAAGTGAGATACAATGTGTTGTTATTCCAACTATTTTGGAAGGGAAGAGTTTGTTGTTGAGTTCACCTTCTGAACATGATAGGACTTTGGCTTACTTGTTGCCCCTTATTCAGCTGTTAAGACAAGATAGAGAGTTGCCTGGTTCGAATTCAAAGCATCCTCGAGCTGTCGTGCTCTGTGCTTCAGAGGAGAAAACTGAACAGTGCTTTAATGCTGCAAGATATATAATTAATAATGCAGAATTGAAGTCTGCAAAGAATTGCGCTCCATCAGATACCGAAAAGTCAAATTCTTCAATTGGCTTAATGATTGGAACTCCTTCTGAGATTCTTCAATACATTGAAGAGGGGATTGTTGTTCCTGCTGAATTAAAATACTTGGTATTGGATGAAGCGGATTCCATGCTCGGTGGGAACCTTGGTCCTGAAATCCATAAAATTATCAGACCATTACAACATCGTGACTCAAAATCCAATGTCGAAAGATTACAAACAATTTTGGCAATTTCAACTATAGCTGAGGTTTTAGGTGAAACATCGCCCCTCGTAAAACGTCTTGAGCGTGATCATGCCGGAAATATTTCTGCACTGTCGATAGAAATGGAGGAAACAGAAGTTTTTCATTTGACAGAGTCTCTGGATGCTCTTAGGAAAAAATTGGAGGAGGCAATGAATTCCCTTTAG 1065 0.3784 MKRRIRNFLSLCFSSLNSQNHHQRLSKSLQSTSSFQNSTTFSTFSKTQRDSMIFEKFKERQLKGSSKGEIKDSSFSVPSCFDTNVEKMAQKGLKNESENNTMVVGNFKELGLSDVLVEVIEEIGEFVPSEIQCVVIPTILEGKSLLLSSPSEHDRTLAYLLPLIQLLRQDRELPGSNSKHPRAVVLCASEEKTEQCFNAARYIINNAELKSAKNCAPSDTEKSNSSIGLMIGTPSEILQYIEEGIVVPAELKYLVLDEADSMLGGNLGPEIHKIIRPLQHRDSKSNVERLQTILAISTIAEVLGETSPLVKRLERDHAGNISALSIEMEETEVFHLTESLDALRKKLEEAMNSL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4090 354 Gene3D - 80 304 IPR027417 -
Tpr2g4090 354 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 282 354 IPR002004 GO:0003723
Tpr2g4090 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 294 IPR027417 -
Tpr2g4090 354 Pfam DEAD/DEAH box helicase 130 295 IPR011545 GO:0003676|GO:0005524
Tpr2g4090 354 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 317 IPR014001 -
Tpr2g4090 354 SUPERFAMILY PABC (PABP) domain 301 352 IPR036053 GO:0003723
Tpr2g4090 354 SMART ultradead3 124 316 IPR014001 -
Tpr2g4090 354 Gene3D - 305 354 - -
Tpr2g4090 354 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 37 354 - -
Tpr2g4090 354 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 37 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4090 Tpr-Chr2 43431943 43435851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4090 289 354 Eukaryotic Initiation Factors Gene Family AT2G23350 42.857 2.35e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4090 - - gmx:100800575 429.098