Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4072 ATGGATTTCAATGATGGCTATGTATCGAAAGAGCACCTTGAGCTTCATCGATCTGCTGCCGAAAGTGTTGATCCGGTATCAGTTTCTCCTTTGCAACTTTCTTCTCCAAAGTCACCGAAATCTCCAAGGTCTCCAAAGGCGCAAGTTAAGGGCAACAATTTAAGTCCAAAAAATAATAAGCAATCACATTCGTCGAAAGATGGACGTCCAAAGAAAGGTGGCTCTGGAGGTAAAGGAACCTGGGGTGGATTGCTTGATACAGATGACGGAAACTCTGTTGACCCCAATGACCCAAACTATGACAGCACTGAGGAGTTAGATGATTCAACCGAAAAGAAAAAGAACATAGCATTGGAAGAGTACAAGAAAAAAGCTACTATAATAGTGGAAGAATACTTTGCAACTGATGATGTTGTTGCAACAATGACTGAACTTAGAGAAGTTGGAAAACCAGAATACAGCTACTATTTTGTCAAAAAGCTCGTCTCAATGTCGATGGATAGACATGACAAAGAAAAAGAAATGGCTGCAATTCTCTTATCTGCACTTTATGCCGATGTAATTCACCCGTCACAAGTTTACAAAGGATTCACCAAACTAGTCGAATCGGCTGATGATTTGATCGTAGATATACCGGACACGGTCGATATTCTTGCGCTTTTCATAGCTAGAGCTGTGGTTGACGACATTCTTCCACCAGCATTTTTGAAGAAACAGATAGCAAACTTACCAGATGATTCTAAAGGAGCTGAGGTCTTAAAGAAAGCTGAGAAAAGCTATTTGACAGCACCTTTACACGCCGAAATCATCGAGCGGCGTTGGGGAGGTAGTAAGAATACAACGGTTGATGATGTGAAGGCAAGGATAAACAATTTCTTGAAAGAATATGTAGTAAGTGGTGACAAGAAAGAAGCTTTTAGATGCATTAAGGACTTAAAAGTTCCTTTCTTCCATCATGAAATAGTGAAAAGAGCTCTTATAATGGCGATGGAAAGGCGACAAGCAGAAACGCCGTTACTAGACTTATTGAAAGAAGCAGCTGAAGAAGGTTTCATCAACACAAGCCAAATGTCAAAAGGGTTCAGCAGGTTGATTGAAACAGTCGACGATTTATCGCTTGACATACCGAACGCGCGCGGAATACTTCAACAACTAATGTCGAAAGCCGCGTCCGAAGGTTGGTTATGTGTTTCATCACTAAAATCACTTACAATTGAGCCTGAAAAGAACACAATACAGGAAAACGTTGCACGGAGTTTCAAGATGAAAACACAATCCATCATTCAAGAGTACTTTTTATCAGGCGATATATTTGAAGTGAATAGTTGTTTAGAACAAGAGAACAACAAAAACTGTGGTGAACTAAATGCAATCTTTGTTAAGAAGCTAATAACTTTAGCAATGGATAGAAAGAATCGAGAAAAAGAAATGGCTTCTGTGTTACTTTCATCGCTTTGTTTTCCACCCGATGACGTTGTGAATGGTTTTGTGATGCTAATTGAATCAGCACATGATACTGCATTAGACAATCCTGTGGTTGTTGAAGATCTTGCAATGTTTCTAGCAAGATCAGTAGTCGATGAAGTTTTAGCGCCGCAACAACTTGAAGATATAGGAACACAATGTTTAAGTCAAGATTCAATTGGAAACAAAGTGCTTTTAATGGCTAAGTCATTGCTAAAAGCAAGATTAGCCGGTGAAAGAATCTTGAGATGTTGGGGAGGGGGTGGAAGTAGCAAACCAGGATGGGAAATCGAAGATGTTAAAGATATGATCGGAAAATTGTTGGAAGAATATGAATCTGGTGGTGATATAAGAGAAGCTTGTAGATGCATGAAAGAGTTAGGAATGCCATTTTTTCATCATGAAGTTGTTAAGAAAAGTTTGGTGAAAATTATTGAAAAGAAAAATGAGAGATTATGGGGTTTACTTAAAGAATGTTTTGATTCTGGATTAATAACTATGAATCAAATGGTTAAAGGTTTTGGAAGACTTGAAGAAACTCTTGATGATTTAGCTTTGGATGTTCCTGATGCTAAGAATCAATTTGGATTTTATGTTGAAAAGGCAAAGAATGAAGGATGGTTGGATAGTTCATATTGTTTCAACAATGCTATAGAGAATGGCACATGCTAA 2136 0.3834 MDFNDGYVSKEHLELHRSAAESVDPVSVSPLQLSSPKSPKSPRSPKAQVKGNNLSPKNNKQSHSSKDGRPKKGGSGGKGTWGGLLDTDDGNSVDPNDPNYDSTEELDDSTEKKKNIALEEYKKKATIIVEEYFATDDVVATMTELREVGKPEYSYYFVKKLVSMSMDRHDKEKEMAAILLSALYADVIHPSQVYKGFTKLVESADDLIVDIPDTVDILALFIARAVVDDILPPAFLKKQIANLPDDSKGAEVLKKAEKSYLTAPLHAEIIERRWGGSKNTTVDDVKARINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAETPLLDLLKEAAEEGFINTSQMSKGFSRLIETVDDLSLDIPNARGILQQLMSKAASEGWLCVSSLKSLTIEPEKNTIQENVARSFKMKTQSIIQEYFLSGDIFEVNSCLEQENNKNCGELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPPDDVVNGFVMLIESAHDTALDNPVVVEDLAMFLARSVVDEVLAPQQLEDIGTQCLSQDSIGNKVLLMAKSLLKARLAGERILRCWGGGGSSKPGWEIEDVKDMIGKLLEEYESGGDIREACRCMKELGMPFFHHEVVKKSLVKIIEKKNERLWGLLKECFDSGLITMNQMVKGFGRLEETLDDLALDVPDAKNQFGFYVEKAKNEGWLDSSYCFNNAIENGTC* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4072 711 ProSiteProfiles MI domain profile. 284 405 IPR003891 -
Tpr2g4072 711 ProSiteProfiles MI domain profile. 587 706 IPR003891 -
Tpr2g4072 711 SUPERFAMILY ARM repeat 583 702 IPR016024 -
Tpr2g4072 711 Pfam MA3 domain 286 395 IPR003891 -
Tpr2g4072 711 Pfam MA3 domain 589 697 IPR003891 -
Tpr2g4072 711 Pfam MA3 domain 420 530 IPR003891 -
Tpr2g4072 711 Pfam MA3 domain 122 232 IPR003891 -
Tpr2g4072 711 PANTHER MA3 DOMAIN-CONTAINING PROTEIN 1 706 - -
Tpr2g4072 711 MobiDBLite consensus disorder prediction 25 61 - -
Tpr2g4072 711 SMART ma3_7 285 396 IPR003891 -
Tpr2g4072 711 SMART ma3_7 588 697 IPR003891 -
Tpr2g4072 711 SMART ma3_7 420 531 IPR003891 -
Tpr2g4072 711 SMART ma3_7 121 232 IPR003891 -
Tpr2g4072 711 ProSiteProfiles MI domain profile. 120 241 IPR003891 -
Tpr2g4072 711 Gene3D - 408 563 - -
Tpr2g4072 711 Gene3D - 108 261 - -
Tpr2g4072 711 SUPERFAMILY ARM repeat 418 577 IPR016024 -
Tpr2g4072 711 PANTHER PROGRAMMED CELL DEATH 4 1 706 IPR039778 GO:0045892
Tpr2g4072 711 SUPERFAMILY ARM repeat 281 402 IPR016024 -
Tpr2g4072 711 MobiDBLite consensus disorder prediction 18 93 - -
Tpr2g4072 711 Gene3D - 271 403 - -
Tpr2g4072 711 Gene3D - 571 703 - -
Tpr2g4072 711 SUPERFAMILY ARM repeat 114 278 IPR016024 -
Tpr2g4072 711 ProSiteProfiles MI domain profile. 419 540 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4072 Tpr-Chr2 43253968 43257196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4072 595 684 Eukaryotic Initiation Factors Gene Family AT4G30680 33.333 2.28e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4072 - - gmx:102668745 1125.15