Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4009 ATGATGAGGCTGAAGACATATGCTGGTCTTAGTTTGATTGCAACTTTGGCTATTACATATCATGCATTTAACAGTCGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCAACATCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATTATGTGTGTTCTGTGGCAACTAACGAAGAAGGTATTCTTGGGTAATCTTCGAGAAGCAGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAGATTCTCTTTGCGATTACTATCTTTAGGCAGGATTTCTCGGTTACTTTCCTAGCGATGGTTACGGCACTGTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTACATTGAGACAACTCCTACAGTGACCACGCTGTCCCATATTCGGATTGTGTCGTTTATGGGTTTCCTTCTTCTTCTCGATAGCATTTTCTTATATAGTTCTCTGAAGCATTTGATAGAAACATGGCAGGCTTCTGTTTCGCTGTTCTTTGCTTTTGAGTACATGATATTGGCAACAACAACAGTGTCAATTTTTGTAAAATATGTTTTCTATGTCAGCGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTTGTTAGGGACTTGCTACACTTGTCCATGTATCTGTGCTTCTTCTGTGTTATTTTTGTAAACTACGGCATTCCCTTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAACTTCAAAGTTCGCATTGCAGATTACATTAGATATCGTAAGATCACTTCAAATATGAATGATCGCTTTCCAGATGCAACCCCTGAAGAGCTCATTGCTAGTGATGCAACTTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTGATATGTGGACATCTTTTTCATGTCCATTGCCTCCGATCATGGCTGGAACGACAGCATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGTTGCTGGAGGGCAGCAAGGATCACAATCAGATGGTCAACGGCAGGGAACAGGCACTGGAAGCACAGGTCAAACTGAGGTTGGCAGTGGGGTGGCAACTGATAGTTTAAGTCGGCATCAAGCTAGACTCCAAGCAGCAGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCTCTGCAACTTCCTTTGTACGACCTCCTGGAGAAGCTTCCAGTCAACAAGCCCAGAAGCAGTTTCATATTCCTGGTGGGCCAGCAAATGTACCCTTTCCTCCAATGGGGCACTTCCATTTAATTCCTTCCCAAGCACATGTGACCCATTTGAATTATGGAGAGGGGTTTGGAAATGATCCAAATATCCAAAGCTTGCAGTTGGAACTTAACAAAAAATTACTGCAACAGCAGATTGAGATTCTGCAAAATCATCTACAGAATCTGCAGTTCACGGAGGCTGAGAGAAGTGTAGATGACGGGACATCATCATCAGAAAGCAGAGGCAAGCTTAGCACTTCTGCGGATATTCAAGATTGA 1560 0.4321 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQLTKKVFLGNLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVTTLSHIRIVSFMGFLLLLDSIFLYSSLKHLIETWQASVSLFFAFEYMILATTTVSIFVKYVFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYLCFFCVIFVNYGIPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELIASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGQRQGTGTGSTGQTEVGSGVATDSLSRHQARLQAAAAAASIYEKSYVYPSATSFVRPPGEASSQQAQKQFHIPGGPANVPFPPMGHFHLIPSQAHVTHLNYGEGFGNDPNIQSLQLELNKKLLQQQIEILQNHLQNLQFTEAERSVDDGTSSSESRGKLSTSADIQD* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4009 519 PANTHER RING ZINC FINGER PROTEIN 1 363 - -
Tpr2g4009 519 PANTHER - 1 363 - -
Tpr2g4009 519 Pfam Ring finger domain 291 330 IPR001841 -
Tpr2g4009 519 SMART ring_2 292 329 IPR001841 -
Tpr2g4009 519 MobiDBLite consensus disorder prediction 495 519 - -
Tpr2g4009 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Tpr2g4009 519 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Tpr2g4009 519 CDD RING-H2_synoviolin 289 330 - -
Tpr2g4009 519 SUPERFAMILY RING/U-box 272 336 - -
Tpr2g4009 519 Coils Coil 465 495 - -
Tpr2g4009 519 MobiDBLite consensus disorder prediction 340 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4009 Tpr-Chr2 42497155 42502221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4009 1 510 C3H Transcription Factor Family AT3G16090 66.211 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4009 K10601 - gmx:100816441 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4009 2 42497155 42502221 Tpr2g4009 2 42497155 42502221 ECH