Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4005 ATGGCTAAGTCTTATTCTTTGGTTCCTTTGGCCCTTTTCACAATCTTCTTTGTACATGCCCTAGCTCGCACTCCCCTTGACTCAAGGTGGTACGATGCCCATGCAACCTTTTACGGTGATATGCAAGGCGCTGAAACCATGCAGGGAGCTTGTGGTTATGGTGATCTCTTTCAACAAGGGTATGGACTTGAAACCGCGGCACTAAGCACTGCATTATTTAACGAAGGCTATAGTTGTGGTGCATGTTTTGAGATCAAATGTGTCAATGACCCCCGATGGTGTGTAAAAAATGTGAACTCAATCACCGTTACTGCAACAAATTTTTGTCCTCCCAATTATAACAAACCTGATGGCAATTGGTGTAATCCTCCACTTAAACACTTTGACTTGAGCATGAAAATGTTTACAACTATTGCCATCTACCAAGCAGGTATCGTCCCTGTTCAATATCGACGTGTTCCTTGCGTCAAAAGTGGTGGTGTTAGGTTTGAACTTAGAGGAAACCCTTATTTCTTAATGGTTTTGGTATACAATGTGGCCAATGCTGGTGATGTTTTACGTGTTTTTATCAAAGGATCTAATACAGATTGGGCTCAAATGACACGTAATTGGGGACAAATTTGGCATACAGGAATAAATTTGGTTGGACAAGATTTATCTTTCTGGGTTACTACAAGTGATAAAAAAGCTTTAGAGTTTGTTTCTGTTATTCCTTCCAATTGGCAATTTGGACAAACTTATCAAGCTTCCAGAAATTTTTAG 762 0.4016 MAKSYSLVPLALFTIFFVHALARTPLDSRWYDAHATFYGDMQGAETMQGACGYGDLFQQGYGLETAALSTALFNEGYSCGACFEIKCVNDPRWCVKNVNSITVTATNFCPPNYNKPDGNWCNPPLKHFDLSMKMFTTIAIYQAGIVPVQYRRVPCVKSGGVRFELRGNPYFLMVLVYNVANAGDVLRVFIKGSNTDWAQMTRNWGQIWHTGINLVGQDLSFWVTTSDKKALEFVSVIPSNWQFGQTYQASRNF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4005 253 SMART dpbb_1 65 150 IPR007112 -
Tpr2g4005 253 Gene3D - 160 253 IPR036749 -
Tpr2g4005 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Tpr2g4005 253 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Tpr2g4005 253 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Tpr2g4005 253 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Tpr2g4005 253 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Tpr2g4005 253 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Tpr2g4005 253 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Tpr2g4005 253 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Tpr2g4005 253 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Tpr2g4005 253 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Tpr2g4005 253 PANTHER EXPANSIN 10 249 - -
Tpr2g4005 253 SUPERFAMILY Barwin-like endoglucanases 29 178 IPR036908 -
Tpr2g4005 253 Gene3D - 19 155 IPR036908 -
Tpr2g4005 253 PANTHER EXPANSIN-A15 10 249 IPR002963 GO:0009664
Tpr2g4005 253 SUPERFAMILY PHL pollen allergen 157 248 IPR036749 -
Tpr2g4005 253 Pfam Lytic transglycolase 65 150 IPR009009 -
Tpr2g4005 253 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Tpr2g4005 253 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Tpr2g4005 253 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Tpr2g4005 253 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Tpr2g4005 253 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Tpr2g4005 253 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Tpr2g4005 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Tpr2g4005 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Tpr2g4005 253 ProSitePatterns TonB-dependent receptor proteins signature 1. 1 106 IPR010916 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4005 Tpr-Chr2 42467529 42468767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4005 17 253 Expansin Gene Family AT5G39280 62.447 1.05e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4005 - - cam:101510232 422.55