Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3999 ATGGGAACAAGAAACTTTGTATGGAATTTCACCAAAAAATTCGTGACATTTGGTCTCATTACTGTCACTGTCTCTGATCGTTATGTAACTGTTGTTCCTGTTCGTGGTGGCTCTATGTCTCCTACTTTTAACCCTAAAAGTGATTCTTTCACAGATGATTATGTTTTGGTGGAGAAGTTTTGCCTTCAGAAGTATAAGTTTTCACATGGAGATATCGTGATTTTCCGTTCACCATCAAATTACAAGGAGACGCACATAAAGAGAATAATTGCATTACCTGGTGAGTGGTTTGTTAGTCGTCATGACCAAGATGTACATAAGATTCCAGAGGGACATTGTTGGGTCGAGGGAGACAATGCAGCTTCTAGCACGGATTCAAAATCATATGGACCTGTTCCTTTGGGTCTAGTAAGAGGAAGGGTTACCCATGTTGTGTGGCCTCCGCAAAGAATAGGAGCTGTCAAGAATACTAATACACCAGACAAATTACCTTCTTCATAG 501 0.4032 MGTRNFVWNFTKKFVTFGLITVTVSDRYVTVVPVRGGSMSPTFNPKSDSFTDDYVLVEKFCLQKYKFSHGDIVIFRSPSNYKETHIKRIIALPGEWFVSRHDQDVHKIPEGHCWVEGDNAASSTDSKSYGPVPLGLVRGRVTHVVWPPQRIGAVKNTNTPDKLPSS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3999 166 TIGRFAM sigpep_I_bact: signal peptidase I 19 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr2g3999 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr2g3999 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr2g3999 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr2g3999 166 Pfam Signal peptidase, peptidase S26 102 146 IPR019533 GO:0004252|GO:0006465
Tpr2g3999 166 Pfam Signal peptidase, peptidase S26 9 95 IPR019533 GO:0004252|GO:0006465
Tpr2g3999 166 CDD S26_SPase_I 31 141 IPR019533 GO:0004252|GO:0006465
Tpr2g3999 166 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 161 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Tpr2g3999 166 SUPERFAMILY LexA/Signal peptidase 29 154 IPR036286 -
Tpr2g3999 166 Gene3D Umud Fragment, subunit A 26 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3999 Tpr-Chr2 42422878 42425283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3999 39 159 MADS-box Gene Family AT1G29960 40.157 5.54e-21 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3999 K09648 - gmx:100527429 259.225