Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3980 ATGAATATGATACTTGTTGGTGCAAATAACTTCACTACATTGATGTTGAAATCCAAAAAGTTTATGCACTATGCATTACCAAAATTTTGTATATTGCAGAATCTTTACACTTCAATTGCACAACCAGAAACAAAAACCATAGCTAGAAATGTAAACACACAAATCCACAATCTTTCCTTACAAGGAAAACTTGAAGAAGCACTTTCATTTGCTTACACCAACCCTTCTCTATCCCTTCAAGACTATGCCTTTTTGTTCCATGCTTGTGCTCAGAAAAAATATCTGCAACAAGGCATGGCATTGCACAATTACATACTTGAAAAACACCCCACAATTCAAAATGATCTTTTTATCACTAATAACCTCTTGAACATGTACTGCAAGTGTGGTCAACTTGATTATGCTCGCTACGTGTTTGATCAAATGCCAAGAAGAAATTTTGTTTCTTGGACTGTTCTTGTTTCTGGGTATGCTCAATTTGGCTTAATCAGAGAGTGTTTTGCTTTATTTTCGGGTATGTTGGCTTGGTTTCGCCCCAATGAATTTGCTTTTGCAAGCGTGCTTAGTGCTTGTGAGGAGTGTGATATCAAATATGGCTTGCAGGTACATGCTGTTGCTTGTAAAATGTCATTGGATTTCAATGTATATGTTGCAAATGCTCTTATTACAATGTATAGCAAGTGTTCTGGTGGTTTCAGTAGATGTTGTGATCAAACTTCGGATGATGCGTGGGCTTTGTTCAAGTCAATGGAGTATAGAAATCTTATATCTTGGAATTCAATGATTTCAGGTTTTCAATTCCGTGGACTTGGGGACAAAGCTATTGGTCTGTTTGCACACATGTATTGCAATGGAATTGGGTTTAATAGTGCCACGTTACTTGGTGTTTTCTCTTCTTTGAATCAATGCAGTAGTACTTTAGATGATATCAACAACACATATCTGAGGAACTGTACTCAATTGCACTGTCTCACTATTAAAAGTGGTCTTATTTCAGAAGTTGAAGTGGCAACTGCATTGGTAAAATCCTATGCAAATCTAGGGGGTCACATTTCTGACTGTTATAGGCTGTTCCGTGATACAAGTGGCCAACATGATATTGTGTCATGGACTGCTATTATTTCTGTGTTTGCAGAGCGAGATCCTGAGCAAGCTTTCCTTCTTTTCTGTCAACTTCATCGGGAAAATTTTGTGTTGGACCGGTATACATTCTCAATCGCCTTAAAAGCTTGCGCATACTTTGTGACTGAGAAAAATGCAATGGCAGTTCACTCACAAGTAATTAAACAAGGATTTCGGGAAGACACGGTTGTTTCAAATGCCTTGATACATGCTTATGGGAGGTCTGGCTCCTTAGCTTTGTCTAAACAAGCATTTGATGAAATGCGTTGCCATGATTTAGTTTCTTGGAATTCAATGCTCAAGTCTTATGCCATGCACGGTCGAGCTAAAGATGCATTGGAGCTCTTCAAGCAAATGGATGTCCGTCCAGATTCTGCAACCTTTGTTGCGCTTCTCGCAGCTTGCAGTCACGCTGGACTAGTTGATGAAGGAGTGAAAATTTTCAACTCTATGACTGAAATTCACGGTATTTCTCCGCAACTAGATCACTTTGCCTGCATGGTTGACCTTTACGGACGAGCTGGGAAGATATTTGAGGCTGAAGAGTTGATACGCGAAATTCCAATGAAACCTGATTCTGTGATTTGGAGTTCATTACTCGGATCTTGCAGGAAGCATGGCAAGGCTGACTTGGCCAAATTGGCAGCTGATAAATTTAAAGAGTTAGATCCTAAAAACTCGTTGGCATATATACAAATGTCAAACATATATTCCTCTGGAGGTAGTTTCATTGAAGCTGGCCTTATGAGGAAGGAAATGAGAGACTCAAAAGTGAGAAAAAGACCAGGTTTAAGCTGGGTCGAAGTTGGGAAGCAAGTTCATGAGTTCACATCTGGTTGCCAACATCATCCACAAAGAGCGGCCATATTGACCCGGCTCGAGACATTGATCGGACAATTGAAAGAAATGGGCTATGCTCCAGAGATTAGCTCACCATTGCATGACATTGAACTGGAGCACATAGAAGACCAATTGTTTCATCATAGTGAGAAGATGGCATTGGTATTTGCTATAATGAATGAAGCAAGTCTTACCAGTGGTGGAAATGTCATTAAAATAATGAAGAATATCCGTATTTGCGTGGATTGTCATAACTTCATGAAATTAGCATCAAAACTATTTCAGAAGGAGATTGTTGTAAGAGATTCGAATCGCTTTCACCATTTCAAATACACAGCTTGTTCTTGTAATGACTATTGGTAA 2325 0.3914 MNMILVGANNFTTLMLKSKKFMHYALPKFCILQNLYTSIAQPETKTIARNVNTQIHNLSLQGKLEEALSFAYTNPSLSLQDYAFLFHACAQKKYLQQGMALHNYILEKHPTIQNDLFITNNLLNMYCKCGQLDYARYVFDQMPRRNFVSWTVLVSGYAQFGLIRECFALFSGMLAWFRPNEFAFASVLSACEECDIKYGLQVHAVACKMSLDFNVYVANALITMYSKCSGGFSRCCDQTSDDAWALFKSMEYRNLISWNSMISGFQFRGLGDKAIGLFAHMYCNGIGFNSATLLGVFSSLNQCSSTLDDINNTYLRNCTQLHCLTIKSGLISEVEVATALVKSYANLGGHISDCYRLFRDTSGQHDIVSWTAIISVFAERDPEQAFLLFCQLHRENFVLDRYTFSIALKACAYFVTEKNAMAVHSQVIKQGFREDTVVSNALIHAYGRSGSLALSKQAFDEMRCHDLVSWNSMLKSYAMHGRAKDALELFKQMDVRPDSATFVALLAACSHAGLVDEGVKIFNSMTEIHGISPQLDHFACMVDLYGRAGKIFEAEELIREIPMKPDSVIWSSLLGSCRKHGKADLAKLAADKFKELDPKNSLAYIQMSNIYSSGGSFIEAGLMRKEMRDSKVRKRPGLSWVEVGKQVHEFTSGCQHHPQRAAILTRLETLIGQLKEMGYAPEISSPLHDIELEHIEDQLFHHSEKMALVFAIMNEASLTSGGNVIKIMKNIRICVDCHNFMKLASKLFQKEIVVRDSNRFHHFKYTACSCNDYW* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3980 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 533 IPR002885 -
Tpr2g3980 774 Gene3D Tetratricopeptide repeat domain 196 318 IPR011990 GO:0005515
Tpr2g3980 774 SUPERFAMILY TPR-like 82 623 IPR011990 GO:0005515
Tpr2g3980 774 Pfam DYW family of nucleic acid deaminases 678 774 IPR032867 GO:0008270
Tpr2g3980 774 Pfam E motif 582 642 IPR046848 -
Tpr2g3980 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Tpr2g3980 774 PANTHER - 36 690 - -
Tpr2g3980 774 TIGRFAM PPR: pentatricopeptide repeat domain 501 533 IPR002885 -
Tpr2g3980 774 TIGRFAM PPR: pentatricopeptide repeat domain 468 494 IPR002885 -
Tpr2g3980 774 TIGRFAM PPR: pentatricopeptide repeat domain 120 148 IPR002885 -
Tpr2g3980 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 496 IPR002885 -
Tpr2g3980 774 Pfam PPR repeat 439 465 IPR002885 -
Tpr2g3980 774 Pfam PPR repeat 468 494 IPR002885 -
Tpr2g3980 774 Pfam PPR repeat 148 174 IPR002885 -
Tpr2g3980 774 Pfam PPR repeat 120 147 IPR002885 -
Tpr2g3980 774 Pfam PPR repeat 540 561 IPR002885 -
Tpr2g3980 774 Pfam PPR repeat 501 527 IPR002885 -
Tpr2g3980 774 Pfam PPR repeat 256 286 IPR002885 -
Tpr2g3980 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Tpr2g3980 774 Gene3D Tetratricopeptide repeat domain 349 494 IPR011990 GO:0005515
Tpr2g3980 774 Gene3D Tetratricopeptide repeat domain 48 195 IPR011990 GO:0005515
Tpr2g3980 774 Gene3D Tetratricopeptide repeat domain 495 662 IPR011990 GO:0005515
Tpr2g3980 774 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 36 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3980 Tpr-Chr2 42290686 42293468 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3980 82 774 Glycoside Hydrolase AT3G49170 35.694 3.60e-134 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3980 - - mtr:MTR_5g008260 1363.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3980 2 42290686 42293468 Tpr1g0665 1 5583938 5591047 PCT