Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3973 ATGCAAGAATCAAACAGCATGCATCAAGAACATGTTCAAATTGTTCCTCCAACACCAACTACAACATCTTATATAGGAGTTAGGAAAAGAAAATGGGGGAAATTTGTATCAGAAATAAGAGAACCAGGTAAGAAAAGTAGAATTTGGTTAGGAAGCTATGAAGAACCACAAATGGCAGCAGCAGCTTATGATGTAGCAGCATTTCATCTCAAAGGTCGTGCCGCGAGGCTAAATTTTCCTGAATTGGTTGAGAAACTTCCTATGCCTTCAAGTTCTGAAGCAGAGGATATTCGTGTAGCAGCTCAACAAGCCGCATTGCAGTTCAAGACAAGAACATTGTCACGAATATCCTCTGCTTCAGGTTCCGAAGGGGGTGGCAATAGCGATAGCAATGGTAATGGAAATGTTGTTCCTTCTGTGAGAGTTGGGCTTTCACCTTCTCAAATTCAAGCGATTAATGAGTTTCCTTTTGATTCACCAAAGATGTTTGGATTTGAATATGATGAATCTAGGATGATGTTTTATGATGATAATAATGTTTTAGAGTTGAGTGAATGGGAAGAAATTCAGTATGACTCATTGTGGGACTAG 591 0.3926 MQESNSMHQEHVQIVPPTPTTTSYIGVRKRKWGKFVSEIREPGKKSRIWLGSYEEPQMAAAAYDVAAFHLKGRAARLNFPELVEKLPMPSSSEAEDIRVAAQQAALQFKTRTLSRISSASGSEGGGNSDSNGNGNVVPSVRVGLSPSQIQAINEFPFDSPKMFGFEYDESRMMFYDDNNVLELSEWEEIQYDSLWD* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3973 196 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Tpr2g3973 196 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Tpr2g3973 196 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Tpr2g3973 196 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Tpr2g3973 196 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Tpr2g3973 196 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Tpr2g3973 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 196 - -
Tpr2g3973 196 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Tpr2g3973 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 5 196 - -
Tpr2g3973 196 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3973 Tpr-Chr2 42252949 42253718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3973 22 196 AP2-EREBP Transcription Factor Family AT1G71450 52.273 8.35e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr2g3973 AP2 6.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3973 - - cam:101493379 243.817