Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3962 ATGAATTGGATTGGTTCAAGTTCATCAAGCACAAGTCATGGAAATGACAAGAAATTAAAGGGAGTTCGGCGTCGAAAATGGGGGAAATGGGTGTCTGAGATTCGAGTTCCGGGGAGTCAAGAGCGTTTATGGTTGGGAACTTATGCTACACGGGAGGCGGCTGCGGTGGCGCACGATGTAGCTGTTTATTGTTTAAAGAGACCTTCTACTTTGGACAAACTCAATTTTCCTGAGATTTTGTCTTCTTATTGTATTCAACAGAGAGATCATTTGATGTCTCCGAGGTCTGTTCAGAAGGTTGCTTCAGACATTGCTATGGATGTTGATGCGCGAAACATCGCAAGAGAAACAACGATGATCAATGAAAGTACTCATCATCACATGAATGAGAATCAGCAGGTGCATAATGTTGTTGCTGATGATGTGTTTTGGTGGGAAGGTTTGGATGGTGATGACTTGAATTTGCAAGGAGTTACTCAGTTTTCTAGCCAACAAGAGGACTTGAACATTTCCATTGAAGATTATCTTTAG 531 0.42 MNWIGSSSSSTSHGNDKKLKGVRRRKWGKWVSEIRVPGSQERLWLGTYATREAAAVAHDVAVYCLKRPSTLDKLNFPEILSSYCIQQRDHLMSPRSVQKVASDIAMDVDARNIARETTMINESTHHHMNENQQVHNVVADDVFWWEGLDGDDLNLQGVTQFSSQQEDLNISIEDYL* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3962 176 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Tpr2g3962 176 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tpr2g3962 176 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Tpr2g3962 176 ProSiteProfiles AP2/ERF domain profile. 18 77 IPR001471 GO:0003700|GO:0006355
Tpr2g3962 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 8 132 - -
Tpr2g3962 176 MobiDBLite consensus disorder prediction 1 20 - -
Tpr2g3962 176 MobiDBLite consensus disorder prediction 1 15 - -
Tpr2g3962 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 132 - -
Tpr2g3962 176 Gene3D AP2/ERF domain 18 79 IPR036955 GO:0003700|GO:0006355
Tpr2g3962 176 CDD AP2 17 78 IPR001471 GO:0003700|GO:0006355
Tpr2g3962 176 SMART rav1_2 18 83 IPR001471 GO:0003700|GO:0006355
Tpr2g3962 176 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3962 Tpr-Chr2 42162798 42163853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3962 8 110 AP2-EREBP Transcription Factor Family AT1G71520 57.143 3.66e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr2g3962 AP2 2.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3962 - - mtr:MTR_5g008790 248.825