Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3956 ATGAGCGCCGCCGACGGAGAAGCTTTGGATTTCGAGCCGGAGGATGATGACTTGATGGACGAAGATAATGCTCCTGACGCCGATGCATCTCCTCCACATCCCAAACTCAAATCCGCCATAACCGCTTCTTCAACTCTCTCCGCTCCTAAAAAGACCAAAGGTCGTGGTTTCCGTCAGGATTCTGATTCCGCCGCTAATCGTACCTCTCGTCTCACTGGTTCTGAATTTGATACTCTTACTGCTGAGGGTGGTCCTGGACCTCAGAGATCTATTGAAGGATGGATTATTTTGGTGACTGGTGTTCATGAGGAAGCTCAAGATGATGATTTGCAAAATGCTTTTGGTGAATATGGAGAGATTAAGAATCTTCACTTGAATCTTGATCGCCGTACTGGTTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGTTCTGAGGAAGCTCGGAATGCAATAGAGAATCTGAATGGATCTGAGCTTCTTACGCAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATTAACGAGTCAGTTAAAAGAAAGAATGCCAGAGCACCTCAGCGGCGCTCCAGGAGCCCTCGGAGGAGATATACATGA 603 0.4643 MSAADGEALDFEPEDDDLMDEDNAPDADASPPHPKLKSAITASSTLSAPKKTKGRGFRQDSDSAANRTSRLTGSEFDTLTAEGGPGPQRSIEGWIILVTGVHEEAQDDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVKRKNARAPQRRSRSPRRRYT* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3956 200 CDD RRM_RBM8 88 175 IPR033744 GO:0003729
Tpr2g3956 200 PANTHER BNAA05G15240D PROTEIN 1 199 - -
Tpr2g3956 200 MobiDBLite consensus disorder prediction 8 24 - -
Tpr2g3956 200 MobiDBLite consensus disorder prediction 186 200 - -
Tpr2g3956 200 MobiDBLite consensus disorder prediction 1 74 - -
Tpr2g3956 200 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 165 IPR000504 GO:0003723
Tpr2g3956 200 PRINTS RNA binding motif protein 8 family signature 46 58 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Tpr2g3956 200 PRINTS RNA binding motif protein 8 family signature 85 99 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Tpr2g3956 200 PRINTS RNA binding motif protein 8 family signature 141 157 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Tpr2g3956 200 PRINTS RNA binding motif protein 8 family signature 159 171 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Tpr2g3956 200 Gene3D - 37 186 IPR012677 -
Tpr2g3956 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Tpr2g3956 200 MobiDBLite consensus disorder prediction 180 200 - -
Tpr2g3956 200 PANTHER RNA-BINDING PROTEIN 8A 1 199 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Tpr2g3956 200 SMART rrm1_1 95 168 IPR000504 GO:0003723
Tpr2g3956 200 SUPERFAMILY RNA-binding domain, RBD 87 198 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3956 40 170 Eukaryotic Initiation Factors Gene Family AT4G34110 28.369 1.54e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3956 K12876 - gmx:100527187 329.717