Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3953 ATGTCTGAAACACTACACTTTGGTGATGGTGTTACTGGAGAGAACAGAAAGCAAAAGCGCAAGATGGAGGAAAGATTAGCTGCTGATTCACATCTGTCATTGTCTTTGAGTATAGGAGGTGGAAGAGGAAGGGGATCTTCATCCAAATCCCTTAAGATCCATGATGAGCAGAGAAAATACCCATGTAAGTTTTGCAATAAGATGTTTTCAAGTCCTCAAGGCTTGGGAGGACACCAAAACGCCCATAGGCGTGAAAGGGTGCTTTCAAGAATGGACAGAGAAATTCAAATGGGAACTTTTGGACTTGGTCCTCATTTGTGTCCATGCTCAAATCGTCATTATCATCATCAATATCCCCTTACAACTGCAGGGTCGACACCTTTTTATCATGGAATTAGATGGCCTCATCTTGTTGCACCTACAAGCTATGGCAATCCATTTGGGATGATCAACAACTCTGCTTGGGCTACTCAAACTCAACTGAACAATAATCAGCTGGAGGTTTCATTTGGTGATGCTCGTAACAATTATTTTCTAATGGAAAATAACAATCACAATCCAAATAACCACCAAATTTGA 579 0.4093 MSETLHFGDGVTGENRKQKRKMEERLAADSHLSLSLSIGGGRGRGSSSKSLKIHDEQRKYPCKFCNKMFSSPQGLGGHQNAHRRERVLSRMDREIQMGTFGLGPHLCPCSNRHYHHQYPLTTAGSTPFYHGIRWPHLVAPTSYGNPFGMINNSAWATQTQLNNNQLEVSFGDARNNYFLMENNNHNPNNHQI* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3953 192 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Tpr2g3953 192 Pfam C2H2-type zinc finger 60 85 - -
Tpr2g3953 192 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 175 - -
Tpr2g3953 192 Gene3D Classic Zinc Finger 44 99 - -
Tpr2g3953 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Tpr2g3953 192 MobiDBLite consensus disorder prediction 10 28 - -
Tpr2g3953 192 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Tpr2g3953 192 PANTHER ZINC FINGER PROTEIN JAGGED 1 175 IPR045320 GO:0003700
Tpr2g3953 192 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3953 Tpr-Chr2 42105795 42106373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3953 58 150 C2H2 Transcription Factor Family AT5G01860 34.021 9.27e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g3953 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3953 - - mtr:MTR_2g067740 200.29