Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3952 ATGTCTGAAACACTACATTTTGGTGATGGTGTTACTGGAGAGAACAGAAAGCAAAAGCGCAAGATGGAGGAAAGATTAGGTGTTGATTCACATCTGTCGTTGTCTTTGAGTATAAGAGCTGAAAGAGGAGGGGAATCTTCATCCAAATCCCTTAAGATCCATGAGGAGCAGAGAAAATACCCATGTAAGTTTTGCAATAAGATGTTTTCAAATCCTCAAGCCTTGGGAGGACACCAAAACGCCCATAGGCGTGAAAGGGTGCTTTTAAGAATGGACAGAGAAATTCAAATGGGAACTTTTGGACTTGGTCCTCATTTGTGTCCATGCTCAAATCCTCGTTATCATCATCAATATCCCCTTACTGCTGCAGGGTGGACACCGTTTTATTATGGAATTAGATGGCCTCATCTTGTTGCACCTACAAGCTATGGAAATCCATTTGGGATGATCAACAACTCTGCTTGGGCTATTCAAACTGCACTCAACAATAATCAGCTGCAAGTTCCTTCATTTGGTGCTGCTCGTAACAATTATTTTCTATTGGAAAATAACAATCTCAATATACCAAATAACCACCAAATTTGA 585 0.4034 MSETLHFGDGVTGENRKQKRKMEERLGVDSHLSLSLSIRAERGGESSSKSLKIHEEQRKYPCKFCNKMFSNPQALGGHQNAHRRERVLLRMDREIQMGTFGLGPHLCPCSNPRYHHQYPLTAAGWTPFYYGIRWPHLVAPTSYGNPFGMINNSAWAIQTALNNNQLQVPSFGAARNNYFLLENNNLNIPNNHQI* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3952 194 MobiDBLite consensus disorder prediction 10 26 - -
Tpr2g3952 194 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Tpr2g3952 194 MobiDBLite consensus disorder prediction 1 26 - -
Tpr2g3952 194 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 189 - -
Tpr2g3952 194 Gene3D Classic Zinc Finger 37 97 - -
Tpr2g3952 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Tpr2g3952 194 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Tpr2g3952 194 PANTHER ZINC FINGER PROTEIN JAGGED 1 189 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3952 Tpr-Chr2 42096841 42097425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3952 56 136 C2H2 Transcription Factor Family AT1G67030 42.353 8.70e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g3952 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3952 - - mtr:MTR_2g067740 208.764