Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3945 ATGCGTTTGAGGCTCAATCAATCAGAAATTCGTATTTGGCTTTATTGCGACGAAATGGGTTCTTCGTTTGACATGTTGTCCGATGTTATCCCTGGACGTGATTCATGGAATTTCAGAGTTCGTGTTCTTCGAATGTGGCCAGTTCATTCGTTTATGAGTCCTGGCGAGGTTAATGGGTTGGAAATGGTCCTTATTGATGAGAAGGGAGGAAAGATTCATGCCTCAATAAGGAAACAATTGCTCTATTTATTTGATAAGAAAATTAATGAAGGAGATGTTTATAAACTCTCCCATTTTGCTGTTGCTCCAAGTGTTGGTGGATATCGTCCGACTCTTCATCCTTACAAGTTGGTATTTCAGATGAAGACAAAGGTTCAGATTTGTGATGGTCCTGATATTCCTTCTTTTGGTTTTAACTTTACTGATCTTGATGTAGTTTCAAGCTATACTGCTGACTTTGGCTTCTTACTAGATGTTATGGGTGTAATGACTGGTATATCAACTGAAAGGGAGTATCTTCGTGATGACAAACTGGTAAAAATGATTGTGCTCGAGCTAACTGATCAGAGCGGTAAGTGTGAATGCGCATTGTTTGGTGACTATGTTGATGAGCTACAAAGGTTAATTGGTAATTCCTCGAAAGGCCTGCCCGTTGTTGTGATTCAGTTTGCTAAGATTAAAATTTTTAGAGAGAAAGCTTCTTTACAGAATGTCATGAAAACTACTAGGATATTTGTTGATCCTAAGACCGAAGAGGCCGAAGCTCTCAAAAAAGGACTGGCCATTGGTGGACTTGCAACTTCATCTTCTGTTTCTATAATTGGTCCTCGTCCTAGAACTTCTTTTGAGGATGATTTCCTGAAGTTATATCCCAAAAAAAGTATTGGACAGCTTGAGTCTCTGAGTGATGAAGGAACATTTGTTGTCTGTGCTGTGATAGATGGGTTTGCTGATGGAGAGAAATGGTGGTACCCTTCCTGTAAGTGTCATAGGAGTGTTGTAGCTGATTCAGGTGCTTTTTATTGCAAAGGATGCGATAAACATGTTTATGTTACCTCTCCAAGGTATAAAGTTAAAGCTAATGTATTTGATGGTGAATCTTTTGCCGTCTTTGTTATTTTCGACGGTGATATGCAGTATCTCATTCAGAAGCAATGTTCTGCGTTGGTTGTATCAGTCAGGGGTGAAAACGCTGGCCTCTACCCCTCTGAATTTGATGACTTGAAGGGCATGAAACTTTTGTTCAAGATTGAAAAAAAAGTTTCTCCAAGTGGTCGATTTGATGGGTCCTACCGTGTTAAGAGAGTGTGCAAAGAAGCTTCCATTGTTGAAGCTTTTGATTTACAAGAAAATGAGTCATCTCCTGTTGAGGATATTACTGAATCTGGTTCTTCCCTTACCCGTGTTGCTGAAAATGGAATTGAATTGTCTGGGAAGTCTGAGTCATTGAAATTTGCTGAAGATGTTTTGGTCACACCTAATTGTGCCGTTTTGGATGAGTCTGTTGGGGATTCCTCTGATGTTGTTATAGTTGCTGATGAGAATGACAGTGATACCTATGTTGGTATGTCTGCTGCCAAGAAAAGAAGGTTAAAGAAGGTTAATGTTAGATCCTCTAAGCGAAACCTAACTGATGATTTTGATGAAGCCATTTCTTCAAAACCAAATGTTGCTCTCAAGGTTCCCAAAATTGAAAAAGAATGA 1704 0.3932 MRLRLNQSEIRIWLYCDEMGSSFDMLSDVIPGRDSWNFRVRVLRMWPVHSFMSPGEVNGLEMVLIDEKGGKIHASIRKQLLYLFDKKINEGDVYKLSHFAVAPSVGGYRPTLHPYKLVFQMKTKVQICDGPDIPSFGFNFTDLDVVSSYTADFGFLLDVMGVMTGISTEREYLRDDKLVKMIVLELTDQSGKCECALFGDYVDELQRLIGNSSKGLPVVVIQFAKIKIFREKASLQNVMKTTRIFVDPKTEEAEALKKGLAIGGLATSSSVSIIGPRPRTSFEDDFLKLYPKKSIGQLESLSDEGTFVVCAVIDGFADGEKWWYPSCKCHRSVVADSGAFYCKGCDKHVYVTSPRYKVKANVFDGESFAVFVIFDGDMQYLIQKQCSALVVSVRGENAGLYPSEFDDLKGMKLLFKIEKKVSPSGRFDGSYRVKRVCKEASIVEAFDLQENESSPVEDITESGSSLTRVAENGIELSGKSESLKFAEDVLVTPNCAVLDESVGDSSDVVIVADENDSDTYVGMSAAKKRRLKKVNVRSSKRNLTDDFDEAISSKPNVALKVPKIEKE* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3945 567 CDD RPA1_DBD_B_like 158 258 - -
Tpr2g3945 567 CDD RPA1_DBD_A_like 39 125 - -
Tpr2g3945 567 CDD RPA1_DBD_C 307 417 IPR013955 -
Tpr2g3945 567 Pfam Domain of unknown function DUF223 61 152 IPR003871 -
Tpr2g3945 567 Pfam Replication factor-A C terminal domain 309 422 IPR013955 -
Tpr2g3945 567 Gene3D - 23 128 IPR012340 -
Tpr2g3945 567 Gene3D - 131 264 IPR012340 -
Tpr2g3945 567 Gene3D - 289 452 IPR012340 -
Tpr2g3945 567 SUPERFAMILY Nucleic acid-binding proteins 22 131 IPR012340 -
Tpr2g3945 567 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 30 390 - -
Tpr2g3945 567 SUPERFAMILY Nucleic acid-binding proteins 293 438 IPR012340 -
Tpr2g3945 567 SUPERFAMILY Nucleic acid-binding proteins 138 265 IPR012340 -
Tpr2g3945 567 PANTHER REPLICATION FACTOR A 1, RFA1 30 390 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3945 Tpr-Chr2 42050489 42053776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3945 31 388 Core DNA Replication Machinery Family AT5G08020 23.592 2.45e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3945 - - mtr:MTR_8g062030 496.893