Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3942 ATGGAATCTATGTATCAAGAAGAAGGGTCTTCATCTGTAACTTGTTCACCTCTACAGTTATTTTCCATGATGTCACTTTCACCTAGCATAGGAGGAATAGGATCTCCATATCCATGGCTTAGTAGAGAATTGAAATCTGAAGAAAGGGGTTTGTATTTGATCCATTTGTTACTAACTTGTGCAAACCATGTAGCTTCTGGTAGTCTTGAAAATGCAAACACAACACTTGAACAGATTTCTCAGCTTGCATCTCCTGATGGAGATACTATGCAGAGAATTGCTGCATATTTCACTGAAGCACTTGCTGATAGGATACTCAAAACTTGGCCTGGACTTCATAGAGCCTTGAATTCGACGAGAATTATCATGCTTTCTGAAGAAGTTATGGTTCAGAAGTACTTTTTTGAGCTTTTCCCTTTCTTGAAGGTTGCATATATTTTGACAAATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTTCATATTATTGATCTAAATGCTGCTGAGCCTGCACAATGGATTGCTCTTTTACAAGTTTTGAGTGCTCGTCCCGAAGGTCCTCCTCATTTGAGAATCACAGGTATTCATCAACAGAAAGAGGTTTTGGATCAAATGGCTCATAAGCTTTCTGAAGAAGCTGAAAAATTGGATATACCATTCCAATTCAATCCTGTTGTTAGCAAGCTAGAGAATCTCGATTTCGACAAACTTCGTGTTAAAACCGGCGAGGCACTTGCAATAAGTTCTATTCTGCAATTACATTCCCTTTTAGCTTTGGATGATGAATCATCATCCTCAAGGAGAAAAAGTCCTCTTCTGTCAAGAAACTCAAATGGACTTCACCTACAAAAAGTTATGCTTATGAACCAAAGCGCGTCATTAGGTGATTTGCTTGAAAAAGATATGGCTAATGGATATACTCCAAGTCCCGATTCAACATCCTCTTCGTCGCCAGCATCTTCAAATGCTTCATTAAATGCCGAGAGCTTTCTCAATGCCTTGTGGAGTTTGTCGCCGAAAGTCATGGTTGTAACCGAACAGGACTCTAATCACAATGGTTCGACTCTGATGGAGAGGCTGCTTGAAGCTCTATATTCTTATGCAGCATTATTTGATTGTTTGGAATCAACTGTGTCAAGAACATCACTAGAAAGATTTAAGATTGAGAAGATGCTGTTTGGTGAAGAAATCAAGAACATTATTGCTTGTGAAGGAGCTGAAAGAAAAGAAAGACATGAAAAGCTTGATAAGTGGTTTATGAGACTTGATTTGTGTGGTTTTGGTAATGTGCCTTTAAGTTATTATGGTATGTTGCAGGCAAGAAGGTTTCTGCAGAGTTATGGTTGTGAGGGATACAAAATGAGAGAAGAAAATGGTTGTGTAGCAATTTGCTGGCAAGATAGGTCATTGTTTTCAACAACAGCTTGGAGAGCTAGGAAGTGA 1449 0.3872 MESMYQEEGSSSVTCSPLQLFSMMSLSPSIGGIGSPYPWLSRELKSEERGLYLIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIIMLSEEVMVQKYFFELFPFLKVAYILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQQKEVLDQMAHKLSEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSSRRKSPLLSRNSNGLHLQKVMLMNQSASLGDLLEKDMANGYTPSPDSTSSSSPASSNASLNAESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERFKIEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDLCGFGNVPLSYYGMLQARRFLQSYGCEGYKMREENGCVAICWQDRSLFSTTAWRARK* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3942 482 PANTHER BNAA06G02820D PROTEIN 386 481 IPR030008 GO:0003700|GO:0005634|GO:0009739
Tpr2g3942 482 PANTHER BNAA06G02820D PROTEIN 331 381 IPR030008 GO:0003700|GO:0005634|GO:0009739
Tpr2g3942 482 PANTHER BNAA06G02820D PROTEIN 3 269 IPR030008 GO:0003700|GO:0005634|GO:0009739
Tpr2g3942 482 Pfam GRAS domain family 53 479 IPR005202 -
Tpr2g3942 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 331 381 IPR005202 -
Tpr2g3942 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 269 IPR005202 -
Tpr2g3942 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 386 481 IPR005202 -
Tpr2g3942 482 ProSiteProfiles GRAS family profile. 44 479 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3942 Tpr-Chr2 42029563 42032398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3942 1 482 GRAS Transcription Factor Family AT1G50420 66.871 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr2g3942 GRAS 4.7e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3942 - - gmx:100814131 730.709