Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3929 ATGTCTACCTTCAAAATTTCTTTCATATTTTCCATACTTGTCTTACTTTTTCACTCAACAAAAAGCACAATTCCAATTTGTGAAAAAAATTCATGTGGAAACAACCCTGATTTAGGATTGAAGTTTCCTTTCCAATTAAGAGAAGAAAATCGAATTAGCGATCGATGTGGGTACCAAGGATTTGAAGTATATTGCAACGATAAGAATCAAACTTTGCTTACACTCTCAAAGTCAACATTTTTTGTGAAATATATTTCCTATGACACACAAAGAATTGGGATCTATGGTCCTAAAGAGTGTCCACCAAAACGATTCCTTCAAAACATACTCAACGATGAATCACCTTTCTTATGGGACAATTCTCACGTGAATGATAATATTTATGAAAATGTAACATTTCTCAATTGTACAAATTTTGCAAATGACCCAAAGATTGATGCTCTTCCTACTATACCTTGTCTAAGCAATATTAATGATAATTATTCTATCATGTATATGTTACAATCATCAACTCTTAATAATTCTTGGTGGAATCAATCATGTCATGAGATTGGTTTTGCTAAGGTTCAAGTCAAAGATAATTCTGGTCAACCAGAGGTAATCATGGATGGACTTTACTCTGATATATTGTTGCGTTGGGACACACCTTCTTGTCATTGTGGAACAGATCAATTTTGTGGCTTTGTAACGGATATGGATCTTCATGTTACTTGTTACAATACCACCTACATTTATGATCTCCCAGATGGAAATTCTACACCTCAAAAGCCTACAAAAAACTACCTTTTTCCAATAGTATGGGGAGTATCTGCAATTTTGTTCTTCATATGGATAGCTTTATCCGTATACAAAAATAGAATGGCGCAAGACAACAGCCAACAAGGACAAACAATTACAAACATAGAACCAAGTAATAGAGAACCACCTTGGTTTATGTTTGGACTTGATCATTCAAGGATAGAACAATATCCAAAGATTCAACTAGCAGAGAGTGGACAATTGCCTAAGTCCATTGATAATGTTTGTTCCATATGTCTTAGTGAGTATAAGCCAATGGAGACATTAAGGAGTATACCTCAATGTAATCATCATTTTCATGCTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACTTGCCCTTTATGTCGAACCTTGCCCGAGTGA 1167 0.3462 MSTFKISFIFSILVLLFHSTKSTIPICEKNSCGNNPDLGLKFPFQLREENRISDRCGYQGFEVYCNDKNQTLLTLSKSTFFVKYISYDTQRIGIYGPKECPPKRFLQNILNDESPFLWDNSHVNDNIYENVTFLNCTNFANDPKIDALPTIPCLSNINDNYSIMYMLQSSTLNNSWWNQSCHEIGFAKVQVKDNSGQPEVIMDGLYSDILLRWDTPSCHCGTDQFCGFVTDMDLHVTCYNTTYIYDLPDGNSTPQKPTKNYLFPIVWGVSAILFFIWIALSVYKNRMAQDNSQQGQTITNIEPSNREPPWFMFGLDHSRIEQYPKIQLAESGQLPKSIDNVCSICLSEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRTLPE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3929 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 387 IPR013083 -
Tpr2g3929 388 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 4 387 - -
Tpr2g3929 388 CDD RING-H2_PA-TM-RING 341 384 - -
Tpr2g3929 388 Pfam Ring finger domain 341 384 IPR001841 -
Tpr2g3929 388 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Tpr2g3929 388 ProSiteProfiles Zinc finger RING-type profile. 342 384 IPR001841 -
Tpr2g3929 388 SMART ring_2 342 383 IPR001841 -
Tpr2g3929 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 387 - -
Tpr2g3929 388 SUPERFAMILY RING/U-box 341 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3929 Tpr-Chr2 41935996 41937297 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3929 41 387 C3H Transcription Factor Family AT2G25410 32.861 1.93e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3929 - - mtr:MTR_5g009190 434.876