Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3927 ATGTCCACCTTCAAAATTTCTTTCATATTTTCCATACTTCTCTTCCTTTTTCATTCAACAAAAAGCACACCTCCAATTTGTGACAAGAAATCTTGTGGAAACCCAGCTGATTTAGGAATATTGAAGTTCCCTTTCCAATTAATAGAAGAAAATCAGAGTGATCGATGTGGTTACCAAGGATTTGAAGTATATTGCAACAATAAGAATCAAACTTCTCTTACACTCTCAGATTCAACATTTGTTGTCAAATATATTTCCTATGAGACACAAAGAATTTGGATCAACGATCCTAAAGAGTGTCCACCAAAACGGTTCATTCAAAACATAAACCTCGATGATTCACCTTTCTCATGGGACGACTCTAACGCGAATGATATTTATGAAAATGTAACATTTCTCAATTGTACAAATTTTGCAAAGGACCCAATAGTTAATAATCTTCCTACTATACCTTGTCTAAGCAATGACAAGTATTCAATCATGTATACGTTATCATCAATTCCTAACAATCCGTGGAATAAATCATGTCATGAAATTGGCTTTGCTATGGTTCCAGTCCAAGATGATTCTGGTCAAAATATGGTAATCTGGAATGGACTTCACTCTGATATATTGTTGCGGTGGGATACACCTTATTGTCATTGTGAAGCAGATCAATTTTGTGGCTTTTCAACGGATACGAGTCTTGATGTTACTTGTTACGACGCCAACTACATTTATGATCGTCCAGGTGGAAAAAACTACTTTTTTTCAATTGTATGGGGAGTATCTGCAATTTTGTTCTTCATATGGATAGCTTTATCCGTATACAAAAATAGAATGGCGCAAGACAACAGCCAACAAGGACAAACAATTACAAACATAGAACCAAGTAATAGAGAACCACCTTGGTTTATGTTTGGACTTGATCATTCAAGGATAGAACAATATCCAAAGATTCAACTAGCAGAGAGTGGACAATTGCCTAAGTCCATTGATAATGTTTGTTCCATATGTCTTAGTGAGTATAAGCCAATGGAGACATTAAGGAGTATACCTCAATGTAATCATCATTTTCATGCTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACTTGCCCTTTATGTCGAAACTTGCCAGAGTGA 1128 0.3555 MSTFKISFIFSILLFLFHSTKSTPPICDKKSCGNPADLGILKFPFQLIEENQSDRCGYQGFEVYCNNKNQTSLTLSDSTFVVKYISYETQRIWINDPKECPPKRFIQNINLDDSPFSWDDSNANDIYENVTFLNCTNFAKDPIVNNLPTIPCLSNDKYSIMYTLSSIPNNPWNKSCHEIGFAMVPVQDDSGQNMVIWNGLHSDILLRWDTPYCHCEADQFCGFSTDTSLDVTCYDANYIYDRPGGKNYFFSIVWGVSAILFFIWIALSVYKNRMAQDNSQQGQTITNIEPSNREPPWFMFGLDHSRIEQYPKIQLAESGQLPKSIDNVCSICLSEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3927 375 ProSiteProfiles Zinc finger RING-type profile. 329 371 IPR001841 -
Tpr2g3927 375 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 374 - -
Tpr2g3927 375 SMART ring_2 329 370 IPR001841 -
Tpr2g3927 375 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 4 374 - -
Tpr2g3927 375 CDD RING-H2_PA-TM-RING 328 371 - -
Tpr2g3927 375 Pfam Wall-associated receptor kinase galacturonan-binding 27 96 IPR025287 GO:0030247
Tpr2g3927 375 SUPERFAMILY RING/U-box 328 372 - -
Tpr2g3927 375 Pfam Ring finger domain 328 371 IPR001841 -
Tpr2g3927 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 374 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3927 Tpr-Chr2 41928461 41929737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3927 40 374 C3H Transcription Factor Family AT2G25410 34.540 3.95e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3927 - - mtr:MTR_5g009190 444.506