Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3916 ATGGACGGAAAACAAAACAGAACAAACATACAACAATTTCAAGATAGAGACGATATTGGATCGTCTCTATCAAATCTTATTTTATCGAGCAGTACAAACACACTCGATTCAATTTTCTCGGATATTCCCTCAATAAACAACTCCTCCGTCACCGCAGCAACCAACTACTTAGGTTCTTCAATTTTTGAACCATTAGGTTCCTCTGTCTACCTTCGCCAAAGAGATATCCTTCAAAAATTCTATGAAGAAACTCGATCAACGAGTTCCTTCGTTCCATCTTCATTTTCAAATCAATCTCTAAACCCATCTTTATACTCAACAATATCAAGTTCAACTTCTTTGTTGAACCCTTTGGATTTGAAGAAAAAGTTATACAGAGGAGTGAGACAGAGACACTGGGGAAAATGGGTTGCTGAAATTCGACTTCCTCAAAATAGAATGAGAGTTTGGCTTGGAACTTATGAAACTGCTGAAGCTGCAGCTTATGCTTATGATCGTGCAGCTTATAAGCTTAGAGGAGAATATGCACGTTTGAATTTTCCAAATTTGAAAGATCCAACTAAGTTGGGTTTTGGTGATTCTACTAAATTGAATGCTTTGAAGAATTCTGTTGATGCTAAAATTCAAGCTATTTGTCAAAAGGTGAAAAGGGAAAAAGCTAAAAAGATTGCTGCTAAGAAGATGAAGAAGAAGAATTTAGAGAGTGATAATAAGAAAGAGGAAACAGAGAAGATTAATTCGTCTTCTTGTTCATCATCTTCGTCTTCATTACCTTTGTCACCGTCGATTTTTTATGAAGATTGGGTGAATGAATTGTTTTCACCAACTGTTTCTGAAGATGGAGTTTGGAAAGGGGAGAATTCAAATTCGCCGAATTCTGTTTCGACAATGGTGACAGAGGAAACAGAGTTTGAAGATTGTTCCTTAGCCTTAGCAAGGATGCCATCTTTTGATCCTGAGTTGATTTGGGAAGTTCTTGCTGTTTAG 987 0.3678 MDGKQNRTNIQQFQDRDDIGSSLSNLILSSSTNTLDSIFSDIPSINNSSVTAATNYLGSSIFEPLGSSVYLRQRDILQKFYEETRSTSSFVPSSFSNQSLNPSLYSTISSSTSLLNPLDLKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTKLNALKNSVDAKIQAICQKVKREKAKKIAAKKMKKKNLESDNKKEETEKINSSSCSSSSSSLPLSPSIFYEDWVNELFSPTVSEDGVWKGENSNSPNSVSTMVTEETEFEDCSLALARMPSFDPELIWEVLAV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3916 328 MobiDBLite consensus disorder prediction 229 245 - -
Tpr2g3916 328 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 15 327 - -
Tpr2g3916 328 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
Tpr2g3916 328 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Tpr2g3916 328 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Tpr2g3916 328 CDD AP2 123 183 IPR001471 GO:0003700|GO:0006355
Tpr2g3916 328 MobiDBLite consensus disorder prediction 226 251 - -
Tpr2g3916 328 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Tpr2g3916 328 SUPERFAMILY DNA-binding domain 124 181 IPR016177 GO:0003677
Tpr2g3916 328 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Tpr2g3916 328 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 327 - -
Tpr2g3916 328 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Tpr2g3916 328 Coils Coil 216 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3916 Tpr-Chr2 41847211 41848779 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3916 18 327 AP2-EREBP Transcription Factor Family AT1G64380 47.536 4.44e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr2g3916 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3916 - - lja:Lj0g3v0046879.1 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3916 2 41847211 41848779 Tpr2g3916 2 41847211 41848779 ECH