Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3908 ATGACTAAGAAACACACTCACCGACTCAACCTTACCAAAGAAAACACTCCAAAAGAACCATTTCCGAAAATAGTTAGAATAACCGTCACAGACAAAGACGCTACAGATTGTTCCAGCGACGAAGAAGAACGTTTCAAGCCTAACCGACTTAAGAAGTTTGTTAACGAGATTATTATAGAGCCATGCGTCAGTGAGAATAATAGCCGCCGGAGCAGTGGTGGTGGAGGTGTTTCGAGGAAGAGAAACAGGACAAACGGTGGAGGAGGAAAAGCAAGAGCTCCGGTGAGTCGACAGGTTTACACCGGGAAGAAATACAGAGGAGTTAGACAACGGCCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCGTCGCGTGGAGTGCGCGTGTGGCTTGGTACGTTTGAAACTGCTGAAGAAGCTGCTATTGTGTACGATAACGCGGCTATTAAGTTGCGTGGACCAGACGCGCTAACTAATTTTATAACTCCACCATCCACTTGTCAGTTATCATCACCGGATAATGAACAACCTCCTCAGCTGTTACCGTTACCGGTAACAAACTCCGGTTACATTTCCGGCGAAGAAGAATCCCAATCACAATCACAGTCACAGTCACAATCTCAATCACATAACAACAATAAGAGTTTGTTTTCTCCTAAATCAGTTCTTCATCCTTGTTCATCTTCAGAAGAAGTAGCTGAATCTGAGTCACTATTTTCAATTCCAAGTGATATATTATTCGATTTTCAGGATTCTTCACCGGCAAATGATGCATTTAACAGCTTCAACACTTTGCCGGAGAATATCTTCTACGCCGATATGGATTGTTCGGAGTATTTCGATTTCGGGTTGGAAAGTTTGCATACACATAAGGATGGTGACTTTTTTCAAGATATTGATGATTTGTTTGGTTCAGATGCTCTTCTTGCTCTTTAA 936 0.4327 MTKKHTHRLNLTKENTPKEPFPKIVRITVTDKDATDCSSDEEERFKPNRLKKFVNEIIIEPCVSENNSRRSSGGGGVSRKRNRTNGGGGKARAPVSRQVYTGKKYRGVRQRPWGKWAAEIRDPSRGVRVWLGTFETAEEAAIVYDNAAIKLRGPDALTNFITPPSTCQLSSPDNEQPPQLLPLPVTNSGYISGEEESQSQSQSQSQSQSHNNNKSLFSPKSVLHPCSSSEEVAESESLFSIPSDILFDFQDSSPANDAFNSFNTLPENIFYADMDCSEYFDFGLESLHTHKDGDFFQDIDDLFGSDALLAL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3908 311 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Tpr2g3908 311 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Tpr2g3908 311 MobiDBLite consensus disorder prediction 64 97 - -
Tpr2g3908 311 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Tpr2g3908 311 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Tpr2g3908 311 CDD AP2 103 160 IPR001471 GO:0003700|GO:0006355
Tpr2g3908 311 SUPERFAMILY DNA-binding domain 104 160 IPR016177 GO:0003677
Tpr2g3908 311 MobiDBLite consensus disorder prediction 1 23 - -
Tpr2g3908 311 MobiDBLite consensus disorder prediction 64 79 - -
Tpr2g3908 311 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Tpr2g3908 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 4 308 - -
Tpr2g3908 311 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Tpr2g3908 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 308 - -
Tpr2g3908 311 MobiDBLite consensus disorder prediction 192 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3908 Tpr-Chr2 41792365 41794190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3908 1 310 AP2-EREBP Transcription Factor Family AT4G27950 37.006 2.77e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g3908 AP2 9.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3908 - - mtr:MTR_5g009620 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3908 2 41792365 41794190 Tpr2g3908 2 41792365 41794190 ECH
Tpr2g3908 2 41792365 41794190 Tpr3g0586 3 5757029 5758073 PCT