Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3896 ATGGGAAATCGCATCAGCAACAAATTCCATTCCAATAATCAAACCCATTCAAAACAACAACAACAACAACAACAACAACAACAACAACAACCTCCACATTCTAAATCAGAACCCTCACATCCCACTCCAACTTCCGTCCACAATCAACCCACCCGCTCCTCCTCCTCCTCCGCCGCTGTTGGCCGTGTCTTAGGCAAACCGATGGAAGACGTCCGATCTATCTACACCTTCGGCCGTGAATTAGGTCGTGGTCAATTCGGAGTCACATATCTAGTAACTCACAAAACCACCAAAGAACAATTCGCCTGCAAATCCATCGCTACCAGGAAGCTCGTTCGTCGCGATGATTTGGATGATATTCGTCGTGAAGTACAGATCATGTACCATCTCACCGGTCACAGGAATATTGTTGAGCTTAAAGGTGCTTATGAGGATCGTCATTCAGTTAACCTTATTATGGAGCTTTGTGCCGGAGGTGAACTCTTTGATCGGATTATATCTAAAGGTCATTACTCTGAGCGTGCTGCGGCGGAGATGTGTCGCCAGATGGTGGCTGTTGTTCATAATTGTCACTCTATGGGTGTTATTCATAGGGATTTGAAGCCGGAGAATTTCTTGCTGCTTAATAAGCATGAGAATTCGCCGCTTAAAGCCACCGATTTTGGTCTCTCGGTGTTTTTCAAGCCAGGAGATGTATTTAAAGATCTTGTTGGAAGTGCATATTATGTTGCTCCTGAGGTGTTGCGTAGAAATTATGGACCCGAAGCTGATATTTGGAGTGCTGGGATTATTTTGTATATTCTCCTCTCTGGTGTTCCTCCCTTCTGGGCAGAAAAGGAACAGGGTATCTTTGATGCTATTCTTCGCGGACATATTGATTTCGCATCCGATCCCTGGCCTAAAATATCAAGTAGTGCTAAAGATCTGATCAAGAAGATGTTGCAAGGTGACCCTAAAGAACGAATTACGGCTGCTGAAGTTCTTAATCATCCTTGGATGAAAGAAGATGGAGCATCCGATAAGCCTCTTGATATTGCTGTGTTAACTAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGCCTCCCCAAACTAGGTACTAAGATTTCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTTGATGGAAATGGAACCATTGATTATATTGAATTTATAACAGCTACCATGCACTTGAATAGAATGGAAAGAGAGGACCACCTGTTCAAAGCTTTTGAATATTTTGACAATGACAAAAGCGGGTACATTACAATGGAAGAGTTGGAATCTGCCCTTACAAAGTATAACATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATTCAGACAATGATGGAAGAATTAACTATGAAGAGTTTGTAGCCATGATGAGGAGTGGCAACCCAGACTTGATAACCAACAAGCGTCAGAAATAA 1578 0.4214 MGNRISNKFHSNNQTHSKQQQQQQQQQQQQPPHSKSEPSHPTPTSVHNQPTRSSSSSAAVGRVLGKPMEDVRSIYTFGRELGRGQFGVTYLVTHKTTKEQFACKSIATRKLVRRDDLDDIRREVQIMYHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAAEMCRQMVAVVHNCHSMGVIHRDLKPENFLLLNKHENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRNYGPEADIWSAGIILYILLSGVPPFWAEKEQGIFDAILRGHIDFASDPWPKISSSAKDLIKKMLQGDPKERITAAEVLNHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGTIDYIEFITATMHLNRMEREDHLFKAFEYFDNDKSGYITMEELESALTKYNMGDEKTIKEIIAEVDSDNDGRINYEEFVAMMRSGNPDLITNKRQK* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3896 525 Pfam EF-hand domain pair 380 440 IPR002048 GO:0005509
Tpr2g3896 525 Pfam EF-hand domain pair 450 512 IPR002048 GO:0005509
Tpr2g3896 525 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Tpr2g3896 525 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Tpr2g3896 525 Pfam Protein kinase domain 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g3896 525 Gene3D - 341 514 - -
Tpr2g3896 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 516 - -
Tpr2g3896 525 SMART serkin_6 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g3896 525 MobiDBLite consensus disorder prediction 1 60 - -
Tpr2g3896 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Tpr2g3896 525 CDD STKc_CAMK 75 332 - -
Tpr2g3896 525 Gene3D Phosphorylase Kinase; domain 1 77 160 - -
Tpr2g3896 525 MobiDBLite consensus disorder prediction 1 63 - -
Tpr2g3896 525 SUPERFAMILY Protein kinase-like (PK-like) 75 343 IPR011009 -
Tpr2g3896 525 Gene3D Transferase(Phosphotransferase) domain 1 161 340 - -
Tpr2g3896 525 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Tpr2g3896 525 SMART efh_1 451 479 IPR002048 GO:0005509
Tpr2g3896 525 SMART efh_1 415 443 IPR002048 GO:0005509
Tpr2g3896 525 SMART efh_1 379 407 IPR002048 GO:0005509
Tpr2g3896 525 SMART efh_1 486 514 IPR002048 GO:0005509
Tpr2g3896 525 ProSiteProfiles EF-hand calcium-binding domain profile. 447 481 IPR002048 GO:0005509
Tpr2g3896 525 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Tpr2g3896 525 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Tpr2g3896 525 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 29 516 - -
Tpr2g3896 525 SUPERFAMILY EF-hand 371 511 IPR011992 -
Tpr2g3896 525 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Tpr2g3896 525 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Tpr2g3896 525 ProSiteProfiles Protein kinase domain profile. 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3896 Tpr-Chr2 41703768 41709154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3896 61 524 EF-hand Containing Proteins AT4G23650 80.000 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr2g3896 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3896 K13412 - gmx:100777096 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3896 2 41703768 41709154 Tpr2g3896 2 41703768 41709154 ECH
Tpr2g3896 2 41703768 41709154 Tpr3g0595 3 5848104 5852299 PCT