Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3892 ATGGCTGAAGAATTTGAGAACAAAGCTAAAGAAGCGTTTTTCGACGACGACTTTTCTGTCGCCGTTGATCTCTACTCTCTGGCCATCGATTTGGATCCTAATAACCCTAATCTCTTCGCTGATAGAGCACAATCTTATATCAAACTCAACTCTTTCACTGAAGCTGTTTCTGATGCTAATAAGGCTATTTTGTTAAACCCTACTTTAGCTAAAGCTTATCTTAGAAAAGGGACTGCTTGTTTTAATCTTGAAGAATATCATACTGCTAAGGTTGCACTTGAAAAGGGTGCTTCTTTTGCTCCTAATGATTCCAGATTTACTAATTTGATTCAACAATGTCAACGCTACATTGATGCTGAGGAATCAGATAGTCTTGCTGGCAACCTACCACCAAATGGAACCAAAACATCTGTACCGCCTGTTGCTGCTGATATCCATATGTCTGATAAAAGTGATGGAACATCCAAAGAAGCTCAAAGAGACGTTCCTGCATCCCAAACTAATGAAGCTGTGCCAAACAGACCAAAATACAGACATGAATATTACCAGAAGCCAGATGAAGTGGTTGTGACAATATTTGCAAAAGGAATACCAGCAGAAAATGTGGCTGTGGAGTTTGGCGAACAAATTCTGAGTGTTACCATCAATGTTCCTGGTCAAGATGCTTATCAATATCAACCTCGATTGTTTGGAAAGATAATACCTGCTAAGTGCAAAGTTGTGGTGTTGTCGACCAAAATTGAAATACGTCTGGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCAAGGATGTGGTTCCTCAAAAGATAAACGTGCCTGCAATTCAATCTGAAAGGCCTGCATATCCATCATCAAAGTCGAGGACTAAGGATTGGGATAAGTTGGAAGCTGAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAGTGCAGATGAGGACATGAGGAGAGCGATGAGCAAGTCTTTTCAAGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGAAGTCCTCCAGAAGGCATGGAGGTGAAGAAATGGGAATATTGA 1128 0.4007 MAEEFENKAKEAFFDDDFSVAVDLYSLAIDLDPNNPNLFADRAQSYIKLNSFTEAVSDANKAILLNPTLAKAYLRKGTACFNLEEYHTAKVALEKGASFAPNDSRFTNLIQQCQRYIDAEESDSLAGNLPPNGTKTSVPPVAADIHMSDKSDGTSKEAQRDVPASQTNEAVPNRPKYRHEYYQKPDEVVVTIFAKGIPAENVAVEFGEQILSVTINVPGQDAYQYQPRLFGKIIPAKCKVVVLSTKIEIRLAKAEAINWTSLEYSKDVVPQKINVPAIQSERPAYPSSKSRTKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQSADEDMRRAMSKSFQESNGTVLSTDWKEVGSKKVEGSPPEGMEVKKWEY* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3892 375 PANTHER PROTEIN SGT1 HOMOLOG A 1 375 - -
Tpr2g3892 375 PANTHER PROTEIN SGT1 HOMOLOG 1 375 IPR044563 GO:0051087
Tpr2g3892 375 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Tpr2g3892 375 Pfam SGS domain 293 373 IPR007699 -
Tpr2g3892 375 SUPERFAMILY TPR-like 1 114 IPR011990 GO:0005515
Tpr2g3892 375 Pfam CS domain 178 253 IPR007052 -
Tpr2g3892 375 ProSiteProfiles SGS domain profile. 284 375 IPR007699 -
Tpr2g3892 375 SUPERFAMILY HSP20-like chaperones 168 270 IPR008978 -
Tpr2g3892 375 CDD p23_CS_SGT1_like 180 263 - -
Tpr2g3892 375 MobiDBLite consensus disorder prediction 148 172 - -
Tpr2g3892 375 ProSiteProfiles CS domain profile. 174 263 IPR007052 -
Tpr2g3892 375 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Tpr2g3892 375 SMART tpr_5 70 103 IPR019734 GO:0005515
Tpr2g3892 375 SMART tpr_5 2 35 IPR019734 GO:0005515
Tpr2g3892 375 SMART tpr_5 36 69 IPR019734 GO:0005515
Tpr2g3892 375 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Tpr2g3892 375 MobiDBLite consensus disorder prediction 355 375 - -
Tpr2g3892 375 MobiDBLite consensus disorder prediction 158 172 - -
Tpr2g3892 375 Pfam Tetratricopeptide repeat 70 103 IPR019734 GO:0005515
Tpr2g3892 375 Pfam Tetratricopeptide repeat 41 68 IPR019734 GO:0005515
Tpr2g3892 375 Gene3D - 169 279 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3892 Tpr-Chr2 41653608 41657838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3892 1 118 U-box Gene Family AT3G07370 28.814 1.03e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3892 K12795 - gmx:100784022 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3892 2 41653608 41657838 Tpr2g3892 2 41653608 41657838 ECH