Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3887 ATGGGCCATCATTCATGCTGCAATCAACAGAAAGTTAAGAGAGGGCTTTGGTCACCTGAGGAAGATGAGAAACTCATCAGATATATTACAACTCATGGTTATGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGATGTGGTAAGAGTTGTAGGTTAAGATGGATTAATTATTTAAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTACATGGTGTTGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCTGGTAGAACGGACAACGAAATAAAAAATTATTGGAATTCATGGATCAAAAAGAAAATTAGAAAGTCTTCTTCTTCTTCATCTATTAATTCATCAATCAATGCACCAAGTGTTGATCATCATCATCATTCCCAGTTCAATTACAATTTCAATCAATTAGATAATTATTTCACCAACCATGAAAATGTAACAACATCAACAACAAAAGAAACCTTATTTTCTTCAACATGTCCTTCATTTATGTTTGACACAAGTTCACTACATGAAACAACATCAACAATAGACACCAATGTAATTATAAGACCAGAAATACTCTTTCATGATACTATGAGTTTGAGTTCTGAAACATGGAACTTGAATCTGAATCATCATCAAGTTCAGGCACTTCCTCCTCATCCTGCATCGACGACAACTTTTACGACCAATATTCATGATTATAATCTGCCACCATTGATAGAGAATAATGTGGAAAATATGATGCAATCTTGTAATATGGATCATGAGGAAGGAGGAGAAATGTTAGAGTTGAATGAATGGGTGGAAAATGAACAACAACAATGTCCTAGCTTTATTTTCAGCTGGGAAAGTGATCAAGAACAAGTACTAGTACCAAACTCATTACCACATATGGGAACAACAAATTCATCATCACTTTCTCCTTTTCCTTCTTCATTAAGAGACAGAAAATTAGGGTTTAGTTGCAGGCTGCTAAGTGATAGAAAAGGGTGCGAGTGTTTTATCGCCGTTCCTCTGTTTACAGCCTCCGCATCGCACATTTCAACCATGATCATTTCAGAGAAGAACCGTAGAGAGATCTCCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCAAAGAAGGATTACAATTTGGCTAAGCACCCTGAGATTGATGTTCCAAATCTGCAAGTGATTAAGCTTATGCAGAGCTTCAAATCTAGGGAATATGTTAGGGAAACTTTTGCTTGGATGCACTATTACTGGTTTTTGACCAATGATGGAATTGAGTTCCTTAGGACTTATCTCAATCTTCCATCTGAGATTGTTCCAGCTACTTTGAAGAAACAGGCTAAGCCAGCTGGAAGGCCATTTGGCGGTCCACCTGGTGATCGCCCTAGGGGCCCACCTAGATTTGATGGTGAAAGGAGATTCGGTGGTGATCGTGATGGATACCGTGGAGGTCCCAGAGGACCTGGTGGTGAATTTGGAGGAGAGAAAGGCGGAGCACCAGCTGACTACAGACCTTCCTTTGGGGGTCCTGGAGGAAGACCTGGCTTTGGTCGTGGTTCTGGTGGTTTTGGAGCACCAACTAGTTCAAATGATGCTTAA 1614 0.4009 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSSSSINSSINAPSVDHHHHSQFNYNFNQLDNYFTNHENVTTSTTKETLFSSTCPSFMFDTSSLHETTSTIDTNVIIRPEILFHDTMSLSSETWNLNLNHHQVQALPPHPASTTTFTTNIHDYNLPPLIENNVENMMQSCNMDHEEGGEMLELNEWVENEQQQCPSFIFSWESDQEQVLVPNSLPHMGTTNSSSLSPFPSSLRDRKLGFSCRLLSDRKGCECFIAVPLFTASASHISTMIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGEFGGEKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPTSSNDA* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3887 537 Gene3D - 68 140 - -
Tpr2g3887 537 Gene3D - 358 461 IPR036388 -
Tpr2g3887 537 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr2g3887 537 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tpr2g3887 537 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 275 535 - -
Tpr2g3887 537 CDD SANT 17 61 IPR001005 -
Tpr2g3887 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr2g3887 537 MobiDBLite consensus disorder prediction 448 537 - -
Tpr2g3887 537 Pfam Plectin/S10 domain 360 451 IPR005326 -
Tpr2g3887 537 MobiDBLite consensus disorder prediction 469 485 - -
Tpr2g3887 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr2g3887 537 CDD SANT 69 111 IPR001005 -
Tpr2g3887 537 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr2g3887 537 Gene3D - 6 66 - -
Tpr2g3887 537 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tpr2g3887 537 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr2g3887 537 PANTHER 40S RIBOSOMAL PROTEIN S10 275 535 IPR037447 -
Tpr2g3887 537 SMART sant 13 63 IPR001005 -
Tpr2g3887 537 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3887 Tpr-Chr2 41605118 41611241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3887 1 306 MYB Transcription Factor Family AT1G63910 48.753 3.64e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g3887 S10_plectin 1.4e-41 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3887 2 41605118 41611241 Tpr2g3887 2 41605118 41611241 ECH