Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3881 ATGTCTTCTGATTTCTATACTGTTGATATTTCTTTCAACCAACATTCAACCACAGACATAATCTCTTATGATCCTTTTAATTTCCTTGATGTAGTTCAAGATGATTTCAACAATTCTTTCTTCTCTTCTTTTTCTCCTCCAACCACTAACCATGTGATGCCTCTAACAAATGGCACAAACAATGAGCTTGAAATTGCATCCAAATTAATGCAGAGGAGCTACAGCTGTAACAATTTTCATGACAAACCTCCTGGTTTTCCTTTTGAACCTTGCCATAGCACACTCATGAATTCTGAAAATTTTCGACCGTGTGAATTGAGCTCCTCCGAAAATAGTTTCTTCAACGGACAAATGAGAAGAGCGTGTAGTGCCGGAGATTGGCAGAACATGAAAGCAACTAACACCCATGGGTCTCAAACGGAGGAAGCAAACTTGTTCAAAGTAGGGCGTTATAGTGCGGAAGAAAGAAAAGAAAAAATCTCTAAATATAGAGCCAAGAGAAAACAGAGGAAATTCAACAAAATTATTAAGTATGCATGCCCAAAGACGCTAGCTGACAATCGGACACGCATACGCGGCAGATTTGCACGTAATGACAACGAAACTAACGACATTCCAAAAGCTGTGTGTTCAAACACAGAACAATACCATGAAGATGAGTTCTGGGTTGATCTTATTGAAGGGTTAAATGACGAGCTCCTCTATTAG 708 0.3898 MSSDFYTVDISFNQHSTTDIISYDPFNFLDVVQDDFNNSFFSSFSPPTTNHVMPLTNGTNNELEIASKLMQRSYSCNNFHDKPPGFPFEPCHSTLMNSENFRPCELSSSENSFFNGQMRRACSAGDWQNMKATNTHGSQTEEANLFKVGRYSAEERKEKISKYRAKRKQRKFNKIIKYACPKTLADNRTRIRGRFARNDNETNDIPKAVCSNTEQYHEDEFWVDLIEGLNDELLY* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3881 235 PANTHER CCT MOTIF FAMILY PROTEIN 12 231 - -
Tpr2g3881 235 Pfam CCT motif 156 198 IPR010402 GO:0005515
Tpr2g3881 235 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515
Tpr2g3881 235 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 12 231 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3881 Tpr-Chr2 41564081 41565244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3881 152 205 C2C2-CO-like Transcription Factor Family AT5G24930 48.214 3.53e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g3881 CCT 2.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3881 - - mtr:MTR_5g010120 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3881 2 41564081 41565244 Tpr2g3881 2 41564081 41565244 ECH
Tpr2g3881 2 41564081 41565244 Tpr3g0625 3 6138409 6140348 PCT