Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3875 ATGGGAAAGGGTAAACCTAGGTCTGTTGAAAAAGGTGTAGTAGGTCCAAATCTAACCGTTTCATCTCCGGCTATACCATCGGCGCCGGTATATTATCCTACCGATGATGAATTCAAAGATCCTTTAGATTTTATTCATAAGATTAGACATGAAGCTGAACCTTTTGGTATTTGTAGAATTGTTCCTCCTAATAATTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTTACTTTTCCTACTAAAACTCAAGCGATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCCGATTCGAAAACTTTTGAGTTGGAATATTCTAGGTTTTTGAAGGATCATTGTAGTAAGAAGCTTAAGGTTAAGAAGAAGATTGTGTTTGAAGGTGAGGATTTGGATTTATGTAAGGTTTTTAATGCGGTGAAACGCTTTGGGGGGTATGATAAGGTTGTTGATGGAAAGAAATGGGGTGATGTTGCTAGGTTTGTGAAATCTTCAGGGAAGATTTCGGATTGTGCTAAGCATGTTTTGTGTCAGTTGTATAGAGAGCATCTTTATGATTACGAGAAATTTTGTAATCGGATTAATAAAGGAATGAATGGGAATTGTTGTAAGAAAAGTGTACAAGAGGATTGTAAGAGTGATCATGGGGTACAAACTTCGGTCAGTTCGGTGTCCAAGAAGCAACATGGGGTTGTAGGTGGTTTAAAAGGTAAGGATCGGAAAGCGAAGGAAGAAAACCGTGATCAGATTTGTGAGCAATGTAAAAGTGGGTTGCATGGGGAGGTGATGCTTTTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATTCCACTGGGAAACTGGTATTGTTTCAACTGTTTGAGTTCTGATAGGGAGAGCTTTGGTTTTGTGCCTGGGAAGAAGTATTCATTGGAAACTTTTAAACGTACTGCGGATAGGTCGAGGAGGAGGTGGTTTGGACAGGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAATTCTGGGAGATTGTGGAGGGGTCGGTCGGTGAGGTCGAGGTTATGTATGGAAATGACTTGGATACGTCTCTATATGGGAGTGGTTTCCCAAATGAAAATAACCAGAAACCACAATCTATTGATGACAAGTTATGGCAAGAATACTCTACTAACCCATGGAATCTGAATAACTTGCCTAAGTTAAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCGTGGCTGTATATTGGAATGTTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGCAGCCTTCCCGACCTTTTCGATGCACAGCCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTTCAGCACACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCACACGGTTCATTTGGAGCTGATCTCTATAAGCGGTTTCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGAAGTTGATAGCAGAGGGTCATCTTATTTGAAAGCGGAATTGTTGACAATAATTGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGAATAGTTAAATCTTCTCGGTTAGCTCCTCGGAAATGTCCCCAATACGTAGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCCGGCCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTTCTAAACTTCGTCTTCTCTACCGTCATTCACTTGGTGAATTGTATGACTTGGCATTTTCTACTGACAAATATACTTCTGAAGAGAAAGCTGAGAGTAGAAGTGTAAAAAGGCAGTCTTCATGTCTGAGTACTTTGACAAAAAAGGTGAATGGCAGCTCCGTTACTTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAAAACGTTTTTGTGACTGATGCATCTGTTACCGCACTAAGGAAAGCTGAACAGTTTCTCTGGGCTGGTTCCGAGATGGATTCCGTTCGGGATATGGTGAAGAGTTTGTCTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGATTGTGTGACAAAAATTGAGTCATGGTTGAGTCATCAGGACTCGAGTTTAAAGAAAATTCATTTAGAATATGTTGATGAGTTACTGAGATATGACCCTGTACCATGCAACGAGCCTCGTTATCATAAACTGAAGGAATTTGCAGAAGAAGCAAGAATGTTAATTCAGGAGATTGAAGCTGCTTTGTCAATGTGTTCTAATATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATCTACATGAAACAGACTAAAAAATTAGAGGCGAAAATTTCTTCAACCAAGGCATGGATGGGTAGTGTCAGAAACTGCATCTCAGCTAGTGATCCTGCTGCATTAGATGTTGACGTTCTTTACAAGTTAAAGTCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCACTTCAGAATCTATTAAACCAGGCAGAATCTTGTAGGTCTCAATGTCGATGTATATTAGAAGGTCCTATGAATCTCAAGAATGTTGGGTTGCTGCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCAGAGTTGAGGCTACTAAGGAATTACCATTCAGATGCTGCGTCATGGGTTTCTCACTTTAACGATGTTTTAGAGAGAGTTCACAGACAGCAAGATCACCATAATTCATTTGATGAATTGAAGAGCATTCTTGAAGAAGGTTTATCTTTGAAAATTCAAGTCGATGAGTTGCCTCTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGACAGAAAGCTTCGAAGGCACATAATTCAAAGATGCCCCTGGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTAGGAATTGAGGGAGAGAAGCAATTCATCAGTTTATCTTGTGTGCTTGGTGTCGCCATGCGTTGGGAGGAAAGGGCTGGCGAGATTCTTTCACTTGAGGCTTCTATTTCTGACTTTGAGGACATGATAAGAGCTTCAGAAAATATATTTGTTATTCTTGCTTCACTTAATGATGTCGAAGAAGCATTATCAGAAGCTACTTCCTGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTAATTGTGTGTCACACTCTGTGCGGAAAGTTGAGGACTTGCAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTATCTTTGGAAGAAAGAAGGATGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTGTGGAGCACGTTCTCTGCTTGATGATGTTCAGTGCTTATTTGAATTGGATAACACTGTTCATGGAATAAGTAGTGATTTATTGTTTGAAGTGGAAGATTTCATTACAAGGATCCAGTCTGCCATAGCATCTGGTGTATCTCTTCGTTTTGATTTCAGTGATATTTCAAAACTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAACCATTCTCCTTCTTTAGAGGATGTTTTGGACGTTGTGGAAGGCCTCTCTCATTCCTCTGTTTCTGGTGCTCTATTGAATGTACTGGTTGATGGGGTTGGGTGGCTTAGGAGAGCGTTAGAGGGGATATCTAGACCTTGCAATTATAGAAGATGCAAATTGACTGATATTCAAGATATTCTCACTGATTATCGGACTATTAAAATGACCTTTACGGAAGTAAATTGTCAACTTGAAGAAGCCATTGGAAAACATAGGTCGTGGCAAGAACAAGTGCATCAATTTTATTGTCTAAGTTCTAGTGAAAGAACTTGGTCATCAATATTGCAGCTCAAGGAACTGGGGGATACCATTGCCTTTCGTTGCCCAGAACTTGATTTAATATTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATGGATAATATTGGACCTTTATTCCAAAATGAAAATTCGCTGCTTCATGCACTGCAGAAGATAAATGAGAGACTAGATAGATCACTATACATATATGGCAAGTTACAAAATCAGAAGGAGCCAAACCTGTGTAACTGCTGCTTCGTTGATTCTGAAGATCAAGAATTTCTTGCTTGTTCCACTTGTATGGACTGCTATCACTTGCAGTGCATTGGATTAACAGCAAAAGACACTGGCCTCGGAGACTATAAGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCCCAGTATTCAAATGGAAGTTCCCTCCTGAGGTTTGAGAAACATATTGAATTGAACATTCTTGTCAAACTTCTGTCTGATGCTGAACATTTATGTTTCGGGATTGACGAAAGAGATCTTCTGAACCAACTTATTGAGAAAGGCTTTGCTTGCAAATCTGCCTTGAGAGAAATAGTGAACCTTTCATCAGCTTATGTTAATGAAGATATTACCATCATCTCTGAAAAATTGACAATTGCTATAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAGGGCGGGAATTGTGACCTTGAGCTGGCTTTAGCAAGATACTTGTGGAAAAGTCAAGTAAATATATTGTTAAGTAGTGAACAAAAGCCCACGGTTGAACAGATTCAGAAACATCTGAAAGAGGGAATGTCGATGGAAATATCACCCAAAGATCACTATATGCTGAAACTTACAAATGTGAATTGCTTGGGCTTGCACTGGGTAGAACTAGCCAAAAAGGTATCAAATGATTCTGGAGCACTCGGTCTAAATAAACTATATGAACTTGTAGTGGAGGGTGAAAACTTGCCTATTGATGTAAATGTGGAACTCAGGATGTTAAGAGCTCGATGTATGCTTTATTGCATTTGTCGAAAGCCATTTGATCCCGGAAGGATGATTGCATGTTATCAATGTAATGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACTCAAGATATCTACATTTGCCCTGCGTGTAGCCCGTGTACAGGATTGCCTACTAACCATGACAGATTAACTAGTGGGAAACTTGAGGAGCCTAAAACACCTTCTCCCAGGCATACTAACCCTAGAAAGAAACAGAAGAGAGATATGTTTGCACCCAGCGATGAAGATGGTAGTGGTTTTAAGTATTCTAATGGGACAAAATGTCCAAGATGGAAAAATCGAAAACCGTTTAGAAGAGTAACCAAGAGACGTGTCGAACTTCAAAGTCTTTCTCCATTTCTATGCATAAAACGATAA 5493 0.4012 MGKGKPRSVEKGVVGPNLTVSSPAIPSAPVYYPTDDEFKDPLDFIHKIRHEAEPFGICRIVPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHCSKKLKVKKKIVFEGEDLDLCKVFNAVKRFGGYDKVVDGKKWGDVARFVKSSGKISDCAKHVLCQLYREHLYDYEKFCNRINKGMNGNCCKKSVQEDCKSDHGVQTSVSSVSKKQHGVVGGLKGKDRKAKEENRDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRESFGFVPGKKYSLETFKRTADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSLYGSGFPNENNQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVFSTLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGSFGADLYKRFHKTAVLSHEELLCVVAQYGEVDSRGSSYLKAELLTIIDREKSWREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTSKLRLLYRHSLGELYDLAFSTDKYTSEEKAESRSVKRQSSCLSTLTKKVNGSSVTFTQLATEWLLQSSTILQNVFVTDASVTALRKAEQFLWAGSEMDSVRDMVKSLSEAQKWAEGIKDCVTKIESWLSHQDSSLKKIHLEYVDELLRYDPVPCNEPRYHKLKEFAEEARMLIQEIEAALSMCSNMSELELLYSRACGLPIYMKQTKKLEAKISSTKAWMGSVRNCISASDPAALDVDVLYKLKSEIADLQVQLPEIDALQNLLNQAESCRSQCRCILEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAASWVSHFNDVLERVHRQQDHHNSFDELKSILEEGLSLKIQVDELPLVEIELKKANCRQKASKAHNSKMPLEFIQQLLKEATMLGIEGEKQFISLSCVLGVAMRWEERAGEILSLEASISDFEDMIRASENIFVILASLNDVEEALSEATSWLRNSKPYLVSSNCVSHSVRKVEDLQLLVSQSKHLKVSLEERRMLELVLNNCKKWECGARSLLDDVQCLFELDNTVHGISSDLLFEVEDFITRIQSAIASGVSLRFDFSDISKLQASCSTLQWCKRALCFCNHSPSLEDVLDVVEGLSHSSVSGALLNVLVDGVGWLRRALEGISRPCNYRRCKLTDIQDILTDYRTIKMTFTEVNCQLEEAIGKHRSWQEQVHQFYCLSSSERTWSSILQLKELGDTIAFRCPELDLILSEVEKVENWKKRCMDNIGPLFQNENSLLHALQKINERLDRSLYIYGKLQNQKEPNLCNCCFVDSEDQEFLACSTCMDCYHLQCIGLTAKDTGLGDYKCSYCEILKGKSQYSNGSSLLRFEKHIELNILVKLLSDAEHLCFGIDERDLLNQLIEKGFACKSALREIVNLSSAYVNEDITIISEKLTIAIKASKVAGVYDQGGNCDLELALARYLWKSQVNILLSSEQKPTVEQIQKHLKEGMSMEISPKDHYMLKLTNVNCLGLHWVELAKKVSNDSGALGLNKLYELVVEGENLPIDVNVELRMLRARCMLYCICRKPFDPGRMIACYQCNEWYHFDCMKLSCTQDIYICPACSPCTGLPTNHDRLTSGKLEEPKTPSPRHTNPRKKQKRDMFAPSDEDGSGFKYSNGTKCPRWKNRKPFRRVTKRRVELQSLSPFLCIKR* 1831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3875 1830 Pfam JmjC domain, hydroxylase 420 536 IPR003347 -
Tpr2g3875 1830 ProSitePatterns Zinc finger PHD-type signature. 250 294 IPR019786 -
Tpr2g3875 1830 CDD PHD_RSF1 250 294 - -
Tpr2g3875 1830 SMART bright_3 96 192 IPR001606 GO:0003677
Tpr2g3875 1830 SUPERFAMILY FYVE/PHD zinc finger 1442 1492 IPR011011 -
Tpr2g3875 1830 Gene3D - 80 197 IPR036431 GO:0003677
Tpr2g3875 1830 Pfam jmjN domain 29 62 IPR003349 -
Tpr2g3875 1830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1432 1497 IPR013083 -
Tpr2g3875 1830 Gene3D Cupin 28 538 - -
Tpr2g3875 1830 SMART ARID_2 95 187 - -
Tpr2g3875 1830 SUPERFAMILY Clavaminate synthase-like 343 568 - -
Tpr2g3875 1830 Pfam PHD-finger 249 296 IPR019787 -
Tpr2g3875 1830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 296 IPR013083 -
Tpr2g3875 1830 SUPERFAMILY FYVE/PHD zinc finger 1688 1747 IPR011011 -
Tpr2g3875 1830 SMART JmjN_1 27 68 IPR003349 -
Tpr2g3875 1830 SUPERFAMILY FYVE/PHD zinc finger 241 297 IPR011011 -
Tpr2g3875 1830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1690 1744 IPR013083 -
Tpr2g3875 1830 PANTHER LYSINE-SPECIFIC DEMETHYLASE 22 928 - -
Tpr2g3875 1830 ProSitePatterns Zinc finger PHD-type signature. 1446 1490 IPR019786 -
Tpr2g3875 1830 ProSiteProfiles Zinc finger PHD-type profile. 247 297 IPR019787 -
Tpr2g3875 1830 CDD ARID 97 187 - -
Tpr2g3875 1830 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Tpr2g3875 1830 Pfam C5HC2 zinc finger 630 681 IPR004198 -
Tpr2g3875 1830 SMART cupin_9 387 553 IPR003347 -
Tpr2g3875 1830 SMART PHD_3 1445 1491 IPR001965 -
Tpr2g3875 1830 SMART PHD_3 249 295 IPR001965 -
Tpr2g3875 1830 SMART PHD_3 1701 1743 IPR001965 -
Tpr2g3875 1830 Coils Coil 827 847 - -
Tpr2g3875 1830 SUPERFAMILY ARID-like 78 194 IPR036431 GO:0003677
Tpr2g3875 1830 Pfam PLU-1-like protein 1148 1420 IPR013637 -
Tpr2g3875 1830 Pfam PLU-1-like protein 727 887 IPR013637 -
Tpr2g3875 1830 Pfam PLU-1-like protein 897 989 IPR013637 -
Tpr2g3875 1830 Pfam PLU-1-like protein 948 1184 IPR013637 -
Tpr2g3875 1830 ProSitePatterns Zinc finger PHD-type signature. 1702 1742 IPR019786 -
Tpr2g3875 1830 ProSiteProfiles ARID domain profile. 95 191 IPR001606 GO:0003677
Tpr2g3875 1830 Pfam ARID/BRIGHT DNA binding domain 105 187 IPR001606 GO:0003677
Tpr2g3875 1830 ProSiteProfiles JmjC domain profile. 387 553 IPR003347 -
Tpr2g3875 1830 MobiDBLite consensus disorder prediction 1756 1799 - -
Tpr2g3875 1830 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 22 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3875 Tpr-Chr2 41500749 41520684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3875 37 92 JUMONJI Transcription Factor Family AT4G20400 48.333 2.56e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr2g3875 PLU-1 4.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3875 K11446 - gmx:100789512 2939.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3875 2 41500749 41520684 Tpr2g3875 2 41500749 41520684 ECH