Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3873 ATGGATGATAGAGAAGCTATGGCATTCTCTGATGGGTCAGGTTCATATTACATGCATAGAGGAGGAGGGGTTGGTGGGTCAGGTAGTGGAGGAGTGTTTCAACAGACACCTCCTGGGTTTAGAGCTTTTTCTAATGCTCATGGTGGTTCTGATGGTTCTGCATATTCAGTAGAGGTTCAACATGGTAGTTTTAGTCATGGTGGTGGTGTTAGCAATAGCATAGGTTCAGCTTCTGGTGCTGTAGTGTCTTATTCAGGTGAGCAGCCTGTGAAAAAGAAAAGAGGGAGGCCTAGAAAGTATGGTCCTGATGTACCTGTTTCTTTGAGACTCTCTCCTATGTCTGCAACTGCTAATTCCACTCCTGATTCGGAGAAACGGCCGAGAGGGCGCCCTCTTGGAAGTGGAAGGAAGCAACAACTAGCTTCTCTAGGTGAATGGATGAACACTTCTGCTGGACAGGCTTTTTCACCCCATGTTATCACGATTGGAGTTCAGGAGGACATTGTAGCAAAGCTGTTGGCGGTTTCACAACATAGACCACGCGCTTTATGCATCTTATCGGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACTAGTGTCAGTGTTACATATGAGGGGCGATTCCAAATATTATGCTTATCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCTCAAAATAGAACTGGTGGCATTAGTGTTTCCCTTTCTAGTCCGGATGGTCATGTTATCGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTACTTTGCAGTTTTGTATATGGTGGCTCTAAGCCGAAGACAGCAAAACAAGGGACGACTACAAAAGATGACGATGATTCAGAGCCTCAGAGTAGTGACAAATTAGCTTCTCCGGGAAGTGCACCACCTAATCAAAACTACACAGCTTCTGGAACAGAAATGTGGCTTGGATCGAGGTCAGGAGATGTGAAAAATGCACATCACACTGGTATTGACTTGATGCATGGGTGA 1023 0.4643 MDDREAMAFSDGSGSYYMHRGGGVGGSGSGGVFQQTPPGFRAFSNAHGGSDGSAYSVEVQHGSFSHGGGVSNSIGSASGAVVSYSGEQPVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPDSEKRPRGRPLGSGRKQQLASLGEWMNTSAGQAFSPHVITIGVQEDIVAKLLAVSQHRPRALCILSGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSYLVAEDGGPQNRTGGISVSLSSPDGHVIGGGVARLIAASPVQVVLCSFVYGGSKPKTAKQGTTTKDDDDSEPQSSDKLASPGSAPPNQNYTASGTEMWLGSRSGDVKNAHHTGIDLMHG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3873 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 270 IPR005175 -
Tpr2g3873 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 340 IPR039605 GO:0003680
Tpr2g3873 340 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 340 - -
Tpr2g3873 340 MobiDBLite consensus disorder prediction 85 140 - -
Tpr2g3873 340 MobiDBLite consensus disorder prediction 296 319 - -
Tpr2g3873 340 MobiDBLite consensus disorder prediction 277 325 - -
Tpr2g3873 340 MobiDBLite consensus disorder prediction 281 295 - -
Tpr2g3873 340 CDD DUF296 157 269 IPR005175 -
Tpr2g3873 340 Gene3D - 157 284 - -
Tpr2g3873 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 270 - -
Tpr2g3873 340 ProSiteProfiles PPC domain profile profile. 152 292 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3873 Tpr-Chr2 41490441 41494035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3873 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.214 6.59e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3873 - - cam:101497147 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3873 2 41490441 41494035 Tpr2g3873 2 41490441 41494035 ECH
Tpr2g3873 2 41490441 41494035 Tpr3g0652 3 6367843 6371651 PCT