Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3858 ATGTTACAAGTGAAAAAGGAGCTGAAAAGTTCACATCATCCAGATTTACTACATTTATGTCTTTCTTCTCCCAATTGTAACAGTGATACTTGTTTTCTTGAATCAACTCATGTTACAGGGAAAGTAAAATCCCAAATTAACTCTACAAAGGGATTCTGGACAGATGAAGAGGATAATCTTTTGATTGAGACATTCAAGAAGCACGACGGAAGCAACTGGAAAAGTATAGCTGCATACTTTCCTGGGCGAACCGACATTGAATGCTTCCATCGTTGGCAAAAGGTTTCGGATTTTGATCTTGGAAAGAGATCATGGACAAAGGAGGAGGATGAGGCCTTAATTGAACTGGTAAGAAAGTATGGTTTCAAGAGATGGTCTTATATTGCAAAATTCATACCAGGTCGTATTGGAAAGCAATGTCGCGAAAGGTGGCATAATAACCTTGATCCAGCTATAAAAAAGGACGCATGGACGGAGAAGGAAGAATCAATACTTGCTTACTATCACCGAATATATGGCAGTAAATGGGCAGAAATTGCAAGGGTTCTTCCTGGAAGGAGTGACAATGCTATAAAAAATCATTGGAACAGCTCAATGAAGAAGAAGACGTCTACATCGCCGATTAGGCATGACATGAATGTTTCCACTTCCAGTTTCTGCACTTCTCTAATAAAGCCAGCTGATGATCAAAGTTTAATTGGAATAGCTTCTCCCCAGCAAAGTCACTGGTTGAAGCACAATGCTGATAACCTTCCAACAAGAATGATTATTCGAAATGCTGATAACCAAACGAATTTTGCTGATAACCTCCTAAGACCGGTCAATTTAACAAATGAAATGGAAACAGTTATGGGTTGCAAAGACCATGCCAACTCTACCTTCTCAGTTAAACATATGAACTCATATTCGGATAATTCGTTGGATATGTTCACTACAAATATGGATTGTTTCCCTTCTCCAAGTACTGTTACTTGCGAAGCCTACAAGTCTCCCAAATGGCAACAGGTTTCTTTGCTAGATTCAAAGTTTTATGCTGGTAACGAATCTGACAGTCCCCATTTGAGCTACTCAAAATTGGCTAATCATGTTGGAAGAGAAAGCAATGACAAAAGTGACGTGAGCCCGGAATCTGTACTAAGAAGCTTAGCAATGACCTATGAGAACACTCCTTCTATTATAAGGAAAAGAACTTCTAGGAAGGGATGCAATGCTGCCGACAATGGCAAGCCTCAAACACCTTCGAGAATCGATTTCTCAACTCCTGAAGAAGGATGTGTAATTGGCTTTGATAATTTAAAACTCAACCAAGGATTTGTTCCATTCCTTCCTAGACATGCAATGGAATGA 1347 0.3942 MLQVKKELKSSHHPDLLHLCLSSPNCNSDTCFLESTHVTGKVKSQINSTKGFWTDEEDNLLIETFKKHDGSNWKSIAAYFPGRTDIECFHRWQKVSDFDLGKRSWTKEEDEALIELVRKYGFKRWSYIAKFIPGRIGKQCRERWHNNLDPAIKKDAWTEKEESILAYYHRIYGSKWAEIARVLPGRSDNAIKNHWNSSMKKKTSTSPIRHDMNVSTSSFCTSLIKPADDQSLIGIASPQQSHWLKHNADNLPTRMIIRNADNQTNFADNLLRPVNLTNEMETVMGCKDHANSTFSVKHMNSYSDNSLDMFTTNMDCFPSPSTVTCEAYKSPKWQQVSLLDSKFYAGNESDSPHLSYSKLANHVGRESNDKSDVSPESVLRSLAMTYENTPSIIRKRTSRKGCNAADNGKPQTPSRIDFSTPEEGCVIGFDNLKLNQGFVPFLPRHAME* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3858 448 Gene3D - 49 97 - -
Tpr2g3858 448 Pfam Myb-like DNA-binding domain 105 163 - -
Tpr2g3858 448 Gene3D - 103 153 - -
Tpr2g3858 448 PANTHER MYB PROTEIN-RELATED 48 277 - -
Tpr2g3858 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 152 IPR017930 -
Tpr2g3858 448 CDD SANT 53 95 IPR001005 -
Tpr2g3858 448 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Tpr2g3858 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 95 IPR017930 -
Tpr2g3858 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 203 IPR017930 -
Tpr2g3858 448 SUPERFAMILY Homeodomain-like 100 195 IPR009057 -
Tpr2g3858 448 CDD SANT 104 148 IPR001005 -
Tpr2g3858 448 SUPERFAMILY Homeodomain-like 46 96 IPR009057 -
Tpr2g3858 448 ProSiteProfiles Myb-like domain profile. 97 148 IPR001005 -
Tpr2g3858 448 Pfam Myb-like DNA-binding domain 51 94 IPR001005 -
Tpr2g3858 448 ProSiteProfiles Myb-like domain profile. 45 96 IPR001005 -
Tpr2g3858 448 Gene3D - 155 218 - -
Tpr2g3858 448 CDD SANT 156 196 IPR001005 -
Tpr2g3858 448 PANTHER TRANSCRIPTION REPRESSOR MYB5 48 277 - -
Tpr2g3858 448 SMART sant 49 98 IPR001005 -
Tpr2g3858 448 SMART sant 153 201 IPR001005 -
Tpr2g3858 448 SMART sant 101 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3858 Tpr-Chr2 41382700 41385640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3858 46 396 MYB Transcription Factor Family AT5G02320 39.687 1.95e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g3858 Myb_DNA-bind_6 6.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3858 - - cam:101501970 540.806