Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3856 ATGTCAACGACGACACGCTCACCGAACCGTTCCACAGAAGACATCGTCGATTCAACTCCGTTTCTACCAAATTCCAGCGGCTCCTCCGACGAAATCAACTCCGGTCGTCGAATTGTTCGTCGTCAGAGACTTCTCCAAGCGGCGAGATTCCTCCGGCAAGCAAGCGGACGACGAATGATGCGAGAACCATCAGTCGTTGTTCGAGAAACAGCTGCGGAGCAATTGGAAGAAAGACAAAGCGATTGGGCGTATTCAAAACCTGTTGTGATTCTTGATATCGTTTGGAACTTCGCTTTCGTTGTTGTGGCTGCAACTGCTTTGTTTCTGAGCATGAATGAATCGCCGGAGATGCCTTTAAGGCTGTGGATTGCTGGTTACGTTCTGCAATGTGTTCTTCATATGGTTTGTGTTTGTTTTGAGTATAGAAGACGGAGAAGGTATCAACGTTCTTCGTCTTCGAATGCAGTAGCAGGTTCTGATAGAATTGGTGGTGCTAGCAGTGGGAACTTGAGTTCTGCTTCGAGAGAAGGTTCTCGTTCTGTTTCTGGTTCCAGTTATGTTTCATTGGCTCAATTTGATGAAGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCTAATACTATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTTTATCCGAAGATTCTCCTCAGCTTTACTGGTTATGTATTATCTTTCTTGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTGGCCTGTATCATTGGTATCGCTGTTTGTTGTTGTCTTCCATGTATCATTGCACTTCTTTATGCTGTTGCAGACCAGGAAGGAGCATCAAAGGAAGATATTGAGCAGTTGTCAAAATTCAAATTCCGAAGAGTTGAAAGTAATGAGAAACAGACTGATAATATTCAAGAACCTGCTGGAGGTATAATGACTGAATGCCGGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGTCTTTCTTCTTATGATGATGGAGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATTAATGCGACATGCCCCCTTTGCAAGTATAACATCTTGAAAAGTAGTAACTTCGGTCCAGAGGAAGTGTAG 1185 0.4346 MSTTTRSPNRSTEDIVDSTPFLPNSSGSSDEINSGRRIVRRQRLLQAARFLRQASGRRMMREPSVVVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATALFLSMNESPEMPLRLWIAGYVLQCVLHMVCVCFEYRRRRRYQRSSSSNAVAGSDRIGGASSGNLSSASREGSRSVSGSSYVSLAQFDEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALSEDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRVESNEKQTDNIQEPAGGIMTECRADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNFGPEEV* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3856 394 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 394 - -
Tpr2g3856 394 SMART ring_2 339 379 IPR001841 -
Tpr2g3856 394 PANTHER TARGET OF ERK KINASE MPK-1 3 394 - -
Tpr2g3856 394 SUPERFAMILY RING/U-box 329 386 - -
Tpr2g3856 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 390 IPR013083 -
Tpr2g3856 394 Pfam Ring finger domain 338 380 IPR001841 -
Tpr2g3856 394 CDD RING-H2_RNF111_like 338 382 - -
Tpr2g3856 394 MobiDBLite consensus disorder prediction 1 33 - -
Tpr2g3856 394 ProSiteProfiles Zinc finger RING-type profile. 339 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3856 Tpr-Chr2 41368359 41373314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3856 18 387 C3H Transcription Factor Family AT1G68070 48.930 1.80e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3856 - - gmx:100790497 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2738 5 49521125 49530816 Tpr2g3856 2 41368359 41373314 PCT