Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3848 ATGGGTCGGGCAAAAACAGCTATGAAATACATTCAAGATGAGAATCCTCGCAAAGTATGTTTCAGGCAAAGAAAAAAAGGATTAAAATCAAAAATATCTCAAATTACTAAGTCGGGAGCAAAAGCTTGTTTGGTCATGTATGATGAAAATAATGAAGGACCAATGACATGGCCAGAAGATCTTGCAACGGTAAACTCCATGCTTCAAGAATATGAGCATCAAAAGATTGATAAAACTCCTAAAGTATTTGATGTCAATGATTACTTTAGAATTAAGAAAAATATGGTTAAAGCTGGGATTACTAAAGTGCATAAAGATATCATCAGCATCAAGTATCCAACATGGCATCCACATTTTAATAAGATGGATGAGAATCAACTCAGAAACTTCATGGCTTCTATAGATGTTAAGATTAGAGCTTGTAATCACAAAATTAGCACGCTGAAAAGTAGCTAG 456 0.3399 MGRAKTAMKYIQDENPRKVCFRQRKKGLKSKISQITKSGAKACLVMYDENNEGPMTWPEDLATVNSMLQEYEHQKIDKTPKVFDVNDYFRIKKNMVKAGITKVHKDIISIKYPTWHPHFNKMDENQLRNFMASIDVKIRACNHKISTLKSS* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3848 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Tpr2g3848 151 PANTHER PROTEIN, PUTATIVE-RELATED 3 149 - -
Tpr2g3848 151 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Tpr2g3848 151 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Tpr2g3848 151 ProSiteProfiles MADS-box domain profile. 1 36 IPR002100 GO:0003677|GO:0046983
Tpr2g3848 151 PANTHER MADS BOX PROTEIN 3 149 - -
Tpr2g3848 151 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3848 Tpr-Chr2 41261237 41261692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3848 1 148 Type I MADS-box Gene Family AT5G55690 27.742 5.73e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr2g3848 SRF-TF 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3848 - - mtr:MTR_4g107170 198.749