Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3847 ATGAATTTTTTCTTGTCATCATTTGGTGAATACTACTCAGATACTTCTTCTTCATCGGAAACAACTTCTTCAAACCGTATAAGCTCTTCTTCAGAAGTCATTTTGGCATCTACTAAACCAAAGAAGAAAGCAGGGAGAAGAGTGTTTAAGGAAACAAGACATCCTGTGTACCGAGGAGTACGAAGAAGAAACAATAACAAGTGGGTTTGTGAGATGAGAATTCCAAACAAAAACAACAAAAGCAATAAGTCAAGAATTTGGCTTGGAACATATACAACACCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAGGGAAATTCAGCTTGTCTTAATTTTGCTGATTCGGCGTGGAAGTTGAGGTTGCCGGAGTCGAATGACGCCGTGGAGATACGGAGGGCGGCAATGGAGGCTGCTAAGTTGTTTGCTGTTGAAGATGGAGTTGTTGTGGATGATGATGATATGGTAGATTCCAAAAAGAATGTACTGGAGGTACAAATTCCGGCGGTGTCGTCGGAATTTGAAGACTTTAATAATTTGCTTTTGAGTATTGCCAATGAGCCTTTACGTTCACTTCCTACTTCACCAATAAATTATGGTGGTACTAGTAACTGGGGTGACATGGAGATGTTTGATACTCAAATTTCACTATGGAATTTCTCAATTTGA 681 0.3994 MNFFLSSFGEYYSDTSSSSETTSSNRISSSSEVILASTKPKKKAGRRVFKETRHPVYRGVRRRNNNKWVCEMRIPNKNNKSNKSRIWLGTYTTPEMAARAHDVAALTLKGNSACLNFADSAWKLRLPESNDAVEIRRAAMEAAKLFAVEDGVVVDDDDMVDSKKNVLEVQIPAVSSEFEDFNNLLLSIANEPLRSLPTSPINYGGTSNWGDMEMFDTQISLWNFSI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3847 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 226 IPR045277 GO:0003700
Tpr2g3847 226 Pfam AP2 domain 55 110 IPR001471 GO:0003700|GO:0006355
Tpr2g3847 226 Gene3D AP2/ERF domain 56 119 IPR036955 GO:0003700|GO:0006355
Tpr2g3847 226 CDD AP2 57 120 IPR001471 GO:0003700|GO:0006355
Tpr2g3847 226 ProSiteProfiles AP2/ERF domain profile. 56 118 IPR001471 GO:0003700|GO:0006355
Tpr2g3847 226 SMART rav1_2 56 124 IPR001471 GO:0003700|GO:0006355
Tpr2g3847 226 MobiDBLite consensus disorder prediction 19 46 - -
Tpr2g3847 226 MobiDBLite consensus disorder prediction 19 36 - -
Tpr2g3847 226 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Tpr2g3847 226 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Tpr2g3847 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 226 - -
Tpr2g3847 226 SUPERFAMILY DNA-binding domain 56 120 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3847 Tpr-Chr2 41258022 41258963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3847 32 224 AP2-EREBP Transcription Factor Family AT1G12610 47.115 6.54e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g3847 AP2 1.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2052 1 21163001 21164619 Tpr2g3847 2 41258022 41258963 ECH
Tpr2g3847 2 41258022 41258963 Tpr2g3847 2 41258022 41258963 ECH