Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3846 ATGGATTTTTTCATGTCATTATCTGGTGAGTACTCAGATACTTCTTCATCAGAAACAAGTTCTTCAAACCTTATAAGTTCTTCAGAAGTGATTTTGGCATCTACTAAGCCAAAGAAACAAGCAGGGAGAAGAGTGTTTAAGGAAACAAGACATCCTGTGTACCGAGGAGTACGAAGAAGAAACAATAACAAATGGGTTTGTGAGATGAGAATTCCAAACAAAAACAACAAAAGCAATAAGTCAAGAATTTGGCTTGGAACATATCCAACACCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAGGGAAAATCAGCTTGTCTTAATTTTGCTGATTCGGCGTGGAAGTTGAGGTTACCGGAGTCGAATGACGCGGTGGAGATAAGACGAGCGGCAATGGAAGCTGCTAAGTTGTTTGCTGGTGAAGATGGTGTGGTTGTAGATGATATGGAAGATTCCAAAAAGAATGTATTGAATGTACAAGTTCCGGTAGTGACGTCTGAATTTGAAGAGTTGCATGATTTGCTTTTGAGTATTGCAAATGAGCCCTTACGTTCACCTCCTCCTTCAATGAATGATTATTGGGGTGATATGGAGATATTTGACACTCCAATTTCATTGTGGAACTTCTCAATTTAA 651 0.3948 MDFFMSLSGEYSDTSSSETSSSNLISSSEVILASTKPKKQAGRRVFKETRHPVYRGVRRRNNNKWVCEMRIPNKNNKSNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSAWKLRLPESNDAVEIRRAAMEAAKLFAGEDGVVVDDMEDSKKNVLNVQVPVVTSEFEELHDLLLSIANEPLRSPPPSMNDYWGDMEIFDTPISLWNFSI* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3846 216 SMART rav1_2 53 121 IPR001471 GO:0003700|GO:0006355
Tpr2g3846 216 CDD AP2 54 117 IPR001471 GO:0003700|GO:0006355
Tpr2g3846 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 216 IPR045277 GO:0003700
Tpr2g3846 216 ProSiteProfiles AP2/ERF domain profile. 53 115 IPR001471 GO:0003700|GO:0006355
Tpr2g3846 216 Pfam AP2 domain 52 107 IPR001471 GO:0003700|GO:0006355
Tpr2g3846 216 Gene3D AP2/ERF domain 53 116 IPR036955 GO:0003700|GO:0006355
Tpr2g3846 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 216 - -
Tpr2g3846 216 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Tpr2g3846 216 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Tpr2g3846 216 SUPERFAMILY DNA-binding domain 53 117 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3846 Tpr-Chr2 41255380 41256187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3846 25 214 AP2-EREBP Transcription Factor Family AT1G12610 46.296 8.21e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g3846 AP2 2.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3846 - - mtr:MTR_5g010940 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3846 2 41255380 41256187 Tpr2g3846 2 41255380 41256187 ECH
Tpr5g2728 5 49456704 49457559 Tpr2g3846 2 41255380 41256187 PCT