Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3836 ATGCAAGAACCAAGCTTGGGAATGATGCACGGTGGTGCTGGTGGTGGTTATGGTGGAGATGGTGGTGGTGGAGATAATAGACAGCTGAAGGCAGAAATAGCAACACATCCTTTGTATGAACAGCTTTTGTCTGCACATGTAGCATGTCTTCGTGTTGCTACTCCTATAGATCAGTTACCATTGATTGATTCTCAGTTATCTCAATCTCATCATCTTCTACGATCTTATATCTCTCAACAAACTCATTCTCTTTCTCCTCATGATCGTCAACAACTCGACAACTTTCTCGCACAATATTTGATAGTGTTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTTCATGCCGTTGAAGCTGTCATGGCTTGCCGTGATATTGAAAATACCTTGCAAGCTCTTACTGGAGTGAGTTTGGGAGAAGGAAGTGGTGCGACAATGTCGGACGATGAAGATGAACAAATGCAGATGGATTATTGTTTAGATAATAATCAATCTGGTAGTGGTGGTGATCATGACATGATGGGTCTTGGTCCATTACTTCCTACTGAATCTGAAAGGTCACTCATGGAACGAGTTCGTCAAGAACTCAAAATTGAGCTCAAACAGGGTTTTAAGTCTCGAATTGAAGATGTACGCGAGGAAATATTAAGGAAAAGAAGAGCCGGGAAATTACCAGGCGACACAACTTCTGTCTTAAAGAATTGGTGGCAGCAACATGCAAAGTGGCCTTATCCAACTGAAGATGACAAAGCAAAACTTGTGGAGGAGACGGGGCTGCAGCTGAAACAAATCAATAACTGGTTCATAAACCAAAGGAAACGAAACTGGCATAGCAATTCTCAATCTGTTACCTCTTTGAAGTCGAAACGCAAGAGAGTTTACACCTTCCAGTGA 900 0.4211 MQEPSLGMMHGGAGGGYGGDGGGGDNRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDSQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQMQMDYCLDNNQSGSGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRVYTFQ* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3836 299 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Tpr2g3836 299 SMART KNOX1_2 27 71 IPR005540 GO:0003677|GO:0005634
Tpr2g3836 299 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Tpr2g3836 299 CDD homeodomain 220 281 IPR001356 GO:0003677
Tpr2g3836 299 Gene3D - 216 290 - -
Tpr2g3836 299 Pfam KNOX1 domain 29 70 IPR005540 GO:0003677|GO:0005634
Tpr2g3836 299 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 294 - -
Tpr2g3836 299 SMART KNOX2_2 82 137 IPR005541 GO:0003677|GO:0005634
Tpr2g3836 299 Pfam KNOX2 domain 85 136 IPR005541 GO:0003677|GO:0005634
Tpr2g3836 299 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 294 - -
Tpr2g3836 299 SUPERFAMILY Homeodomain-like 219 284 IPR009057 -
Tpr2g3836 299 SMART HOX_1 219 284 IPR001356 GO:0003677
Tpr2g3836 299 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3836 Tpr-Chr2 41130882 41136875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3836 1 293 Homeobox Transcription Factor Family AT1G62990 77.778 5.23e-169 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tpr2g3836 KNOX2 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3836 - - gmx:100808872 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3836 2 41130882 41136875 Tpr2g3836 2 41130882 41136875 ECH