Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3792 ATGGCCGACGAAGCAAAAGCCAAAGGCAACGCCGCATTCTCTTCCGGTGACTTCGCAACCGCAATTCGTCACTTCTCTGAAGCCATCGATCTTTCTCCTAACAACCATGTCCTTTATTCCAACCGATCCGCAGCTTACGCTTCTCTTCAGAAATACTCCGATGCTTTAACCGACGCTAAGAAAACCGTCGAACTCAAACCTGATTGGTCAAAAGGCTATAGTCGTCTCGGCGCGGCTCATCTTGGTTTATCTCAATTTGATGATGCTGTTTCTGCTTATAAAAAAGGTCTTGAAATTGATCCTAATAATGAGCCTTTGAAATCAGGTTTAGCCGATGCAAAGAAAGCCTCCGCGGCTAGGTTTAGCCGCGGCTCTGCTCTGGCTAATCCTTTTGGTGATGCTTTTTCTGGTCCTGAGATGTGGGCTAAGCTTACCGCTGATCCTGGAACTAGGGTTTATCTTCAACAACCTGATTTTGTTAAGATGATGCAAGATATTCAAAAGGATCCAAATAATTTGAACTTGTATTTGAAGGATCAAAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTTAAGATTAATAAAGGTCCTGGTGATGATGTTGATATGCCGGATATTTCTTCTCCGTCTTCTTCTTCCTCTTCTGAGAGGAAGAGGGCAGCTGAAGCTGAGCCTCCTAAGCAGCCTGAGCCGGAACCTGAACCCGAACCAATGGAATTGGCTGATGAAGAAAAAGAGAAAAAGCATAGGAAGGCTGAGGCACAGAAAGAAAAGGAGGCTGGTAATGCAGCTTATAAGAAGAAGGATTTCGATACCGCGATTCAACATTACTCAAAAGCTTTGGAATTGGATGATGAGGATGTATCTTTCCTCACTAACCGTGCTGCTGTATACTTGGAGATGGGAAAGTATGAGGATTGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGAAGAGAACTACGATCAGATTACAAGATGATAGCAAGAGCTTTGACAAGGAAGGGAACTGCCATGGGCAAAACGGCAAAATGCTCTAAAGATTATGAGCCCGTCATTGAGACTTATCAAAAAGCGCTTACAGAGCACCGCAACCCAGACACCCTGAAGAAACTTAATGAAGCTGAAAAGGCTAAGAAAGAGCTTGAACAACAAGAATACTATGATCCAGAATTGGCCGATAAGGAAAGAGAAAAAGGTAATGATTACTTTAAGCAGCAGAAGTATCCTGAAGCTATTAAGCATTACACTGAGTCTCTAAAAAGAAACCCAAAAGATCCTAAGGCTTATAGTAACAGAGCTGCATGTTACACCAAACTGGGAGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAATGCATTGAGCTTGATCCAACCTTTACCAAGGGTTATACCCGTAAAGGTGCTGTTCAGTTTTTCATGAAAGAGTATGAAAAGGCTTTGGAAACATACAGGGAGGGGTTGAAACATGACCCCAACAACCAGGAGTTACTTGATGGCATTGGAAGGTGTGTACAACAAATTAATAGAACCAGTCGTGGAGATGTAACTCCTGAAGAGTTGAAGGAGAGACAGGCCAAGGCAATGTCAGATCCAGAGATACAGAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAAGAAAATCCAAAGGCTGCACAGGAACATACCAAGAACCCTGGTGTGATGGACAAGATCCAAAAGCTTATCAGTGCTGGAATTGTCCAGATGAAGTAA 1752 0.4287 MADEAKAKGNAAFSSGDFATAIRHFSEAIDLSPNNHVLYSNRSAAYASLQKYSDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQFDDAVSAYKKGLEIDPNNEPLKSGLADAKKASAARFSRGSALANPFGDAFSGPEMWAKLTADPGTRVYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKINKGPGDDVDMPDISSPSSSSSSERKRAAEAEPPKQPEPEPEPEPMELADEEKEKKHRKAEAQKEKEAGNAAYKKKDFDTAIQHYSKALELDDEDVSFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDYKMIARALTRKGTAMGKTAKCSKDYEPVIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYYDPELADKEREKGNDYFKQQKYPEAIKHYTESLKRNPKDPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYREGLKHDPNNQELLDGIGRCVQQINRTSRGDVTPEELKERQAKAMSDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3792 583 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 582 - -
Tpr2g3792 583 Pfam Tetratricopeptide repeat 7 61 - -
Tpr2g3792 583 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Tpr2g3792 583 Gene3D - 128 195 - -
Tpr2g3792 583 SMART tpr_5 330 367 IPR019734 GO:0005515
Tpr2g3792 583 SMART tpr_5 255 288 IPR019734 GO:0005515
Tpr2g3792 583 SMART tpr_5 70 103 IPR019734 GO:0005515
Tpr2g3792 583 SMART tpr_5 394 427 IPR019734 GO:0005515
Tpr2g3792 583 SMART tpr_5 289 322 IPR019734 GO:0005515
Tpr2g3792 583 SMART tpr_5 462 495 IPR019734 GO:0005515
Tpr2g3792 583 SMART tpr_5 2 35 IPR019734 GO:0005515
Tpr2g3792 583 SMART tpr_5 36 69 IPR019734 GO:0005515
Tpr2g3792 583 SMART tpr_5 428 461 IPR019734 GO:0005515
Tpr2g3792 583 SUPERFAMILY TPR-like 393 506 IPR011990 GO:0005515
Tpr2g3792 583 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Tpr2g3792 583 Pfam Tetratricopeptide repeat 463 495 IPR001440 GO:0005515
Tpr2g3792 583 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Tpr2g3792 583 ProSiteProfiles TPR repeat profile. 462 495 IPR019734 GO:0005515
Tpr2g3792 583 ProSiteProfiles TPR repeat profile. 394 427 IPR019734 GO:0005515
Tpr2g3792 583 Gene3D Tetratricopeptide repeat domain 393 512 IPR011990 GO:0005515
Tpr2g3792 583 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Tpr2g3792 583 Gene3D - 513 583 - -
Tpr2g3792 583 MobiDBLite consensus disorder prediction 218 264 - -
Tpr2g3792 583 SUPERFAMILY TPR-like 254 382 IPR011990 GO:0005515
Tpr2g3792 583 PANTHER TPR REPEAT CONTAINING PROTEIN 1 582 IPR045248 GO:0006457|GO:0030544|GO:0051879
Tpr2g3792 583 ProSiteProfiles TPR repeat profile. 255 288 IPR019734 GO:0005515
Tpr2g3792 583 SMART CBM 532 571 IPR006636 -
Tpr2g3792 583 SMART CBM 137 176 IPR006636 -
Tpr2g3792 583 MobiDBLite consensus disorder prediction 200 264 - -
Tpr2g3792 583 Pfam TPR repeat 262 303 - -
Tpr2g3792 583 Pfam TPR repeat 401 442 - -
Tpr2g3792 583 Coils Coil 366 386 - -
Tpr2g3792 583 Gene3D Tetratricopeptide repeat domain 252 388 IPR011990 GO:0005515
Tpr2g3792 583 Pfam STI1 domain 524 575 IPR041243 -
Tpr2g3792 583 Pfam STI1 domain 138 191 IPR041243 -
Tpr2g3792 583 ProSiteProfiles TPR repeat profile. 428 461 IPR019734 GO:0005515
Tpr2g3792 583 Coils Coil 239 261 - -
Tpr2g3792 583 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Tpr2g3792 583 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3792 Tpr-Chr2 40826634 40830498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3792 393 505 U-box Gene Family AT3G07370 26.549 1.95e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3792 K09553 - gmx:100816776 919.842