Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3770 ATGGAGAGGTACAAATGCAAGCTTTGCACAAGAACATTAGCCAGTAGCAGAGCATTGGGTGGACACATGAAGGCTCATTTTGCCACCCTCCGTCTTCCTCCTCCTCCCTCCGAAGATGAACGATCCAAGCGAAACCCAAAAATCACCTTTGGCCAAAACTCAGAACAAAAGAAACTTAAACAGAGTTTTTTAGATTCACACTCACCACTAACTGAAACTGAACCAGAACCAGAACAGGTTAGTTCAATTTCTGATACTTCCCCTGAAGAAGAAGAAGTTGCTATAACCCTCATGTTGCTATCAAGAGATAAATGGAATAAGAACAGTGAAGTTGAAAGATCAATGGGATTAATGGAAGAGATTAAGCACAAAAAAGTTAGTGGGAAGCAAAAATGTGACAAATGTGGAAATAACTTTAAAAGCTATAGAGCATTGGAAAGTCACAGAAACATTTGTCTTCAAAATGAAGCAAATCCGGTTGCAACAACTAGTAGTGTTCACAAATGTATGATTTGTTTTAAGGTTTTTGGGTCTGGTCAAGCATTAGGTGGTCACAAAAGATCTCACTTTTATCCACCTTTGAAGAAAAAGCTCTCTTTCTTCGATCTCAACTTGCCACCTTCACCCGAAGAAAACGATCCTAGTGTTCTTTCCGATGCGTAG 663 0.3967 MERYKCKLCTRTLASSRALGGHMKAHFATLRLPPPPSEDERSKRNPKITFGQNSEQKKLKQSFLDSHSPLTETEPEPEQVSSISDTSPEEEEVAITLMLLSRDKWNKNSEVERSMGLMEEIKHKKVSGKQKCDKCGNNFKSYRALESHRNICLQNEANPVATTSSVHKCMICFKVFGSGQALGGHKRSHFYPPLKKKLSFFDLNLPPSPEENDPSVLSDA* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3770 220 Gene3D Classic Zinc Finger 127 189 - -
Tpr2g3770 220 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 42 - -
Tpr2g3770 220 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 40 220 - -
Tpr2g3770 220 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Tpr2g3770 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 159 IPR013087 -
Tpr2g3770 220 SMART c2h2final6 130 150 IPR013087 -
Tpr2g3770 220 SMART c2h2final6 4 26 IPR013087 -
Tpr2g3770 220 SMART c2h2final6 167 189 IPR013087 -
Tpr2g3770 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Tpr2g3770 220 SUPERFAMILY beta-beta-alpha zinc fingers 3 149 IPR036236 -
Tpr2g3770 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 189 IPR013087 -
Tpr2g3770 220 MobiDBLite consensus disorder prediction 47 89 - -
Tpr2g3770 220 Pfam C2H2-type zinc finger 3 26 - -
Tpr2g3770 220 Pfam C2H2-type zinc finger 166 189 - -
Tpr2g3770 220 Pfam C2H2-type zinc finger 131 149 - -
Tpr2g3770 220 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Tpr2g3770 220 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 40 220 IPR044303 GO:0006355
Tpr2g3770 220 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 42 IPR044303 GO:0006355
Tpr2g3770 220 MobiDBLite consensus disorder prediction 29 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3770 Tpr-Chr2 40662816 40663697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3770 1 217 C2H2 Transcription Factor Family AT3G60580 31.359 1.50e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g3770 zf-C2H2_6 3.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3770 - - gmx:100806512 181.415