Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3752 ATGGTTTCCCGGGAAAATCCCAATTGGTTTTTCGATTATGGCTTGATTGATGAAATTTCCGTTCCCGATCCCACCTTCGCCGTTCCTTCCCAAGGTTTCACTTGGCCCTCCCAGCCCTTCAATGTTTCTTCCAATGTCGGTGCTGAAATTGATAGCTCATTAGGGGATTCTGGCAGTCTCAAAGAGTCTGGTTCAAAGAAGAGGGGTAGATCTGAGTCATGTGCTGCTACTAGCTCCAAGGCATGTCGGGAGAAGTTGCGTAGAGATAGGCTTAATGACAAGTTTGTCGAATTGGGTTCGATCTTGGAGCCTGGAAGGCCTGCAAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTGCGAATGGTGACACAGTTAAGGGGCGAGGCCCAAAAGCTTAAAGATGCTAATATGGGTCTTCAAGAAAAAATTAAAGAGTTAAAGGTTGAAAAGAATGAACTTCGTGACGAGAAACAGAGACTCAAGACAGAGAAAGAGAAATTGGAGCAGCAGCTGAAATCTATCAATGCACAACCTAGTTTCTTGCCTGCCCCCCCTACTGCACTCCCTGCTGCATTTGCTGCGCAAGGCCAAGCCCATGGCAACAAGTTGGTACCCTTTCTTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTACTTCGTCCTCCAGTTGCCTAA 714 0.4692 MVSRENPNWFFDYGLIDEISVPDPTFAVPSQGFTWPSQPFNVSSNVGAEIDSSLGDSGSLKESGSKKRGRSESCAATSSKACREKLRRDRLNDKFVELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANMGLQEKIKELKVEKNELRDEKQRLKTEKEKLEQQLKSINAQPSFLPAPPTALPAAFAAQGQAHGNKLVPFLSYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3752 237 CDD bHLH_AtILR3_like 80 155 - -
Tpr2g3752 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Tpr2g3752 237 Gene3D - 76 152 IPR036638 GO:0046983
Tpr2g3752 237 MobiDBLite consensus disorder prediction 53 78 - -
Tpr2g3752 237 Coils Coil 123 178 - -
Tpr2g3752 237 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Tpr2g3752 237 SMART finulus 81 132 IPR011598 GO:0046983
Tpr2g3752 237 PANTHER BHLH TRANSCRIPTION FACTOR 1 237 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Tpr2g3752 237 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 237 - -
Tpr2g3752 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3752 Tpr-Chr2 40516501 40520127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3752 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 73.750 5.45e-118 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g3752 HLH 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3752 - - gmx:100788858 375.555