Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3744 ATGGCTTTGACGATGAGGGCTGCAGTGGCGGCGCCCCGCGGTTTACGCCGACTTTTCTGCACCAACCCAACCGCTTCTTCTCCCACTTTCCCTTTCACTTCAACGCCGCCTTCCGGAGCTACTTCCACTCGACAGATGGCGGATCCCAGCACCAACCTCTTCGTCTCCGGGCTTTCCAAACGTACCACAACAGAGAATCTGAGGGCAGCATTTCAAAAGTTTGGTGAAGTTGTTCATGCTAGGGTGGTAACTGATCGAGTCTCAGGTTACTCTAAAGGGTTTGGTTTTGTGCAATATGCTACTCTAGAAGATGCTGCTAAGGGCATCGAAGGCATGGATGGCAAGTTTTTGGATGGCTGGGTTATATTTGCAGAGTATGCAAAACCAAGACCACCACCCGGAGAAGCTGCAAGTAATATGACTAAACAATATGGCCGACCTTACTAA 447 0.5011 MALTMRAAVAAPRGLRRLFCTNPTASSPTFPFTSTPPSGATSTRQMADPSTNLFVSGLSKRTTTENLRAAFQKFGEVVHARVVTDRVSGYSKGFGFVQYATLEDAAKGIEGMDGKFLDGWVIFAEYAKPRPPPGEAASNMTKQYGRPY* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3744 148 SMART rrm1_1 52 125 IPR000504 GO:0003723
Tpr2g3744 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 119 IPR000504 GO:0003723
Tpr2g3744 148 SUPERFAMILY RNA-binding domain, RBD 32 146 IPR035979 GO:0003676
Tpr2g3744 148 PANTHER TRANSFORMER-2-RELATED 1 146 - -
Tpr2g3744 148 Gene3D - 26 139 IPR012677 -
Tpr2g3744 148 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 146 - -
Tpr2g3744 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3744 Tpr-Chr2 40459853 40463203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3744 20 131 Eukaryotic Initiation Factors Gene Family AT3G11400 29.787 6.41e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3744 - - gmx:100784609 206.453