Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3740 ATGAAAGCATGGCCAGCAATACAATCTTCTTCTTCAACTACTTATTCTTCTCCTTCAATGGGAATGGTTTATGCAAACATGGACTCTTTATCACTTAACTATACTGCTGCTGCTGCTGCATCTTCTTCTTCATCTCAAGATTTCTATGTTTCAAAGGAAGGTACGGACAATACTACTGCTAAGTGGTCTTTACCATTTATGAGGAAATGTTGTATTGCAAGAAACTTTGAGGAAAACCAAAACAGTGATGAAGTTGGAGAAGGTAATGGTTCTGATTCTGGTGATGATGGTGTTGGAGAAAACAACGGTGACAAAATTAACCCTAATGAGAATAATTATGTCAGTGGCAAAGAGGTAATAGATACTGGACATTCTAAACTATGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAATCTGATAGCTGAAAAGTTAGATGGAAGATCAGGTAAGAGTTGTAGGCTTAGATGGTTCAACCAATTGGATCCAAGGATTAATAGAAGAGCTTTTAGTGAAGAAGAGGAAGAAAGACTAATGCAAGCTCATAGGATTTATGGAAACAAATGGGCCATGATTGCTAGGCTTTTTCCTGGAAGAACTGATAATGCTGTTAAGAATCACTGGCATGTTATCATGGCTAGAAAGTACAGAGAACAATCCAGTGCTTACAGAAGAAGGAGGCTGAATCAATCTGTTTACAGAAGAATAGAAGATAATGCAGCAAACTTTGTTTCTAGAGATATAGCCACAGGGATGATGGAATCAGTACCATCACCCTATTGTATTAACCTCCCAAATGGTTATAACATAACTACTAGTTTCCCATTTTCATCTTTCCATGGAGTAATTGATGGTGGTGTTGCAATTGATTGTGGCTTAAATGGTTCAGCTCATTTTTCTGGTAGCAAAGAAGCAATCTCAAGTAACAAACAGACCCCTAGTAGCCCTTTTGGCTTGTTTGCTCAACAGACACCACTTGATTTCATTTCTGGAGGGATAAGAAATGATCATTATAGCCAAATGAAATGCTGGGATAATCAACCAACTGGTTTTTACCATCAATATCCCCAATATATGATGCAAATGCAACAACAAAACAACAATTTTTACAGTTTCTCATCAAATTCAACCACAGCAGCAACATCAACAACACAGATATTAGGCAGTGAAGTTTCACTATCATCGGTGGCAGCAACAGAAGATCACAATCCCCCTCCTTCAGATACAATTCCATTTATTGATTTCCTTGGAGTAGGAGCCACAACATGA 1314 0.382 MKAWPAIQSSSSTTYSSPSMGMVYANMDSLSLNYTAAAAASSSSSQDFYVSKEGTDNTTAKWSLPFMRKCCIARNFEENQNSDEVGEGNGSDSGDDGVGENNGDKINPNENNYVSGKEVIDTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRIEDNAANFVSRDIATGMMESVPSPYCINLPNGYNITTSFPFSSFHGVIDGGVAIDCGLNGSAHFSGSKEAISSNKQTPSSPFGLFAQQTPLDFISGGIRNDHYSQMKCWDNQPTGFYHQYPQYMMQMQQQNNNFYSFSSNSTTAATSTTQILGSEVSLSSVAATEDHNPPPSDTIPFIDFLGVGATT* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3740 437 Gene3D - 130 181 - -
Tpr2g3740 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 231 IPR017930 -
Tpr2g3740 437 ProSiteProfiles Myb-like domain profile. 130 176 IPR001005 -
Tpr2g3740 437 MobiDBLite consensus disorder prediction 81 113 - -
Tpr2g3740 437 Pfam Myb-like DNA-binding domain 130 176 IPR001005 -
Tpr2g3740 437 Pfam Myb-like DNA-binding domain 182 225 IPR001005 -
Tpr2g3740 437 SUPERFAMILY Homeodomain-like 130 223 IPR009057 -
Tpr2g3740 437 SMART sant 181 229 IPR001005 -
Tpr2g3740 437 SMART sant 129 178 IPR001005 -
Tpr2g3740 437 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Tpr2g3740 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 176 IPR017930 -
Tpr2g3740 437 PANTHER MYB PROTEIN-RELATED 20 436 - -
Tpr2g3740 437 CDD SANT 133 174 IPR001005 -
Tpr2g3740 437 PANTHER MYB TRANSCRIPTION FACTOR 20 436 - -
Tpr2g3740 437 CDD SANT 184 224 IPR001005 -
Tpr2g3740 437 Gene3D - 183 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3740 Tpr-Chr2 40413297 40416156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3740 127 243 MYB Transcription Factor Family AT1G26780 88.889 9.22e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g3740 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3740 K09422 - vvi:100253313 385.956