Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3735 ATGGCAACAACAACAGAAGAAGAACAAGAAGAGTACATGCAACAACTCAGATCCAAAGCAACAGAACTTTTCATCAGAGAAGAATGGAACGATTCAATTCAAGCATATTCCCAATTCATCACTCTCTGCACCCACAATCTCTCTCTTCCTCACTCTGACCCACAAAAACTTCACAAATCTCTCTGCATAGCCCTCTGCAACCGCGCCGAAGCTAAATCCAGATTACGTGATTTCAACTCCGCATTGCAAGATTGTGATCATGCTTTGCAACTTGATGCTACCCATTTCAAAACCCTAGTTTGCAAAGGTAAGATTTTGCTTTTTCTTAATAGATACTCAATGGCTCTTCATTGCTTTAAAACAGCTCTTCTTGATCCTCAAGCTAGTGGGAACTCTGAATTTCTTGTTGGGTATTTTGAAAAATGTAAAAAGTTTGAATTTTTATCAAGGACTGGGAATTTGGATCTTTCTGATTGGGTTTTGAATGGGTTTCCTGGTAAGGCTCCTGAACTTGCTGAGTATATTGGTTCTGTTGAGATTAGAAAATCGGAAATTAGTGGGCGTGGGGTTTTCGCAACAAAGAATATTGATGCAGGGTCTTTGATTTTGGTTACTAAGGCAATTGCAATTGAGAGGAGTATATTGGCAGGTAAAGATTTGAGTGAGGATACACAATTAGTTATGTGGAAGAATTTTATTGATAAAGTTGTTGATTTTGTTAGAAAATGTCATAAGACTAGGGATTTGATTGGTAAATTGTCAATTGGGGAAAATGAGGATGAACTTGAGGTGCCTGATGTAGAACTCTTTAGGCCTGAGAGCATTGGTGAAATGCATTCAAGTGAGGATATTGATATTGATATGGTGAAGTTATTGGCTATATTGGATGTTAATTCTCTAACTGAGGATGCAGTTTCGGCCAATGTTTTGAGGAAGAACAATGATTGTTATGGTGTTGGGTTATGGTTGCTTCCTTCATTCATCAATCACTCCTGTTGTCCTAATGGGAGGCGATTGCATGTTGGGGATTATTTGATAGTTCATGCTTCAAGAGATTTGAAAGCCGGTGAAGAGATAACTTTGGCCTATCTTGATCCACTTACTTCCTTGAACAAGAGAAAAGATATGTCAGTGACATGGGGGATTCATTGTAAGTGCAAGAGGTGCAAGTTTGAAGGGGAAATCTTGTTCTCCAAGCAAGAGATGAAGGAGATTGAGATTGGTATTGAAAGAGGGATGGATGTTGGTGGTTTGGTGTATAAACTTGAGGAACAAATGAAGAGATGGAAGGTTAGAGGGAAAGAAAAGGGATACTTGAGGGCTTCATTTTGGTCTTTATACTCGGAGGCTTACGGTTCGGAGAGGTGTATGAAAAGATGGGGAAGGAGGATTCCAGCATTGGATGCAGTGGTTGATAGTATCACAGATGTAGTGGGAGGTGATCACAGGGTGCTTAAGATTTTGATGGAGGAATTGAAGAAAAAAGGCGGTGGTAGTGGTGGTGGAAATTTGGAGATGGAGAAAGTTTTCAAGTTAGCAAGAGAAGTGTATGGAAAGGTAGTGAAAAAGCAAGCAATGAAGACACTGCTTGAGCTTTGCATTGCTGATTGA 1611 0.3973 MATTTEEEQEEYMQQLRSKATELFIREEWNDSIQAYSQFITLCTHNLSLPHSDPQKLHKSLCIALCNRAEAKSRLRDFNSALQDCDHALQLDATHFKTLVCKGKILLFLNRYSMALHCFKTALLDPQASGNSEFLVGYFEKCKKFEFLSRTGNLDLSDWVLNGFPGKAPELAEYIGSVEIRKSEISGRGVFATKNIDAGSLILVTKAIAIERSILAGKDLSEDTQLVMWKNFIDKVVDFVRKCHKTRDLIGKLSIGENEDELEVPDVELFRPESIGEMHSSEDIDIDMVKLLAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFINHSCCPNGRRLHVGDYLIVHASRDLKAGEEITLAYLDPLTSLNKRKDMSVTWGIHCKCKRCKFEGEILFSKQEMKEIEIGIERGMDVGGLVYKLEEQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKKKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMKTLLELCIAD* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3735 536 Gene3D SET domain 280 394 IPR046341 -
Tpr2g3735 536 ProSiteProfiles SET domain profile. 176 364 IPR001214 GO:0005515
Tpr2g3735 536 SUPERFAMILY SET domain 177 390 IPR046341 -
Tpr2g3735 536 SUPERFAMILY TPR-like 8 123 IPR011990 GO:0005515
Tpr2g3735 536 Gene3D Tetratricopeptide repeat domain 6 143 IPR011990 GO:0005515
Tpr2g3735 536 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 3 520 - -
Tpr2g3735 536 CDD SET_SMYD 292 389 - -
Tpr2g3735 536 SMART set_7 176 370 IPR001214 GO:0005515
Tpr2g3735 536 Pfam SET domain 187 363 IPR001214 GO:0005515
Tpr2g3735 536 SMART tpr_5 13 46 IPR019734 GO:0005515
Tpr2g3735 536 SMART tpr_5 96 128 IPR019734 GO:0005515
Tpr2g3735 536 SMART tpr_5 62 95 IPR019734 GO:0005515
Tpr2g3735 536 Gene3D SET domain 176 269 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr2g3735 SET 3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3735 - - mtr:MTR_4g082140 937.176