Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3730 ATGGCTACTATCTTTTCTGGAGGTTCAGTTTCTCCCTTTCTTTTTCACAGCAATAAGGGCATGATATCATTTACACCCAAAAGTCCAATTCTTCAGCTGAAGAGGCCTATCTCTGCAAAATCAGTAGCTTCAGTTGGAACTGAGACATCACTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTTCAGGAAGAAGGTGTTATCACTGCAAAGACACCTGTGAAAGCTAGTGTGGTTCCAGAAGGTCTAGGATTGGTTGCCCTCAAAGACATTTCTAGGAATGATGTTGTTTTGCAGGTACCAAAAAGGCTATGGATAAATCCAGATGCAGTTGAAGCTTCAGAGATTGGGAAAGTATGCAGTGAGTTGAAGCCATGGTTGTCTGTTATACTCTTTCTCATAAGAGAGAGGTCAAGGGGTGATTCTATTTGGAAGCACTACTTTGGTATTCTGCCACAGGAAACTGATTCTACTATTTATTGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTACTCAACTTCTGAACACAACCCTGTCTGTGAAAGAATATGTGGAGAATGAATGTCTTAAACTGGAAAAAGAAATCATTCTCCCTAATAAGCGGCTTTTTCCTTCTCCTGTAACACTGGATGACTTCTTCTGGGCATTTGGGATGCTCAGATCAAGAGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTATAATTCCACTGGCAGACTTGATTAACCACAGTGCCAGAGTAACTACAGATGATCATGCTTCTGAAGTTAAAGGACCCGCTGGTCTTTTCTCATGGGATTACCTGTTTTCCGTAAGGAGCCCCCTTTCTGTCAAAGCTGGAGAACAGGTATATATCCAATATGATTTAAACAAAAGCAATGCAGAATTGGCTTTGGACTACGGTTTCATTGAACCAAATGCAGATCGAAATGCATACACCCTGACACTGGAGATATCTGAGTCAGACCCTTTTTTTGATGACAAACTAGACATTGCTGAGTCCAATGGTTTTGCTCAGACAGCATACTTTGATATCTTCTACAACCGCCCCCTTCCACCAGGGATGCTTACATATCTGAGACTAGTAGCGCTAGGTGGTACCGATGCTTTCTTATTGGAATCGTTGTTCAGAGACGCCGTCTGGGGTCATCTTGAGTTGCCAGTGAGCCGTGACAATGAGGAGCTATTATGCAAAGCGGTTCGAGACGCCTGCAAATCTGCCCTTGCTGGTTATCATACAACCATTGAACAGGATCGCAAATTGAAAGAAGAAAATCTAGATTACAGGCATGAAATAGCAGTTGGAGTCAGAGAAGGAGAAAAGATGGTCCTGCAGCAAATTGATGAGATCTTCAAGCAGAAAGAATTGGAACTAGACCAGTTGGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGCGAAACTGGTGATGTCCTTGGCGACCTTGGAAAATTCTTCTAA 1473 0.4277 MATIFSGGSVSPFLFHSNKGMISFTPKSPILQLKRPISAKSVASVGTETSLSPAVQTFWKWLQEEGVITAKTPVKASVVPEGLGLVALKDISRNDVVLQVPKRLWINPDAVEASEIGKVCSELKPWLSVILFLIRERSRGDSIWKHYFGILPQETDSTIYWSEEELQELQGTQLLNTTLSVKEYVENECLKLEKEIILPNKRLFPSPVTLDDFFWAFGMLRSRAFSRLRNENLVIIPLADLINHSARVTTDDHASEVKGPAGLFSWDYLFSVRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNADRNAYTLTLEISESDPFFDDKLDIAESNGFAQTAYFDIFYNRPLPPGMLTYLRLVALGGTDAFLLESLFRDAVWGHLELPVSRDNEELLCKAVRDACKSALAGYHTTIEQDRKLKEENLDYRHEIAVGVREGEKMVLQQIDEIFKQKELELDQLEYYQERRLKDLGLCGETGDVLGDLGKFF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3730 490 SMART set_7 72 295 IPR001214 GO:0005515
Tpr2g3730 490 Gene3D - 305 469 IPR036464 -
Tpr2g3730 490 SUPERFAMILY SET domain 51 309 IPR046341 -
Tpr2g3730 490 Pfam Rubisco LSMT substrate-binding 321 445 IPR015353 -
Tpr2g3730 490 PIRSF RMT_SET 1 489 IPR011192 GO:0009507|GO:0030785
Tpr2g3730 490 ProSiteProfiles SET domain profile. 65 289 IPR001214 GO:0005515
Tpr2g3730 490 CDD SET_RBCMT 66 304 IPR044431 GO:0016279|GO:0018022
Tpr2g3730 490 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 23 488 IPR011192 GO:0009507|GO:0030785
Tpr2g3730 490 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 36 481 - -
Tpr2g3730 490 Pfam SET domain 82 288 IPR001214 GO:0005515
Tpr2g3730 490 Gene3D set domain protein methyltransferase, domain 1 51 304 - -
Tpr2g3730 490 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 36 481 - -
Tpr2g3730 490 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 312 483 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3730 Tpr-Chr2 40299866 40303013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3730 52 244 NAC Transcription Factor Family AT3G56570 30.198 2.90e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr2g3730 SET 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3730 K00592 - ag:AAA69903 859.751