Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3708 ATGGAGGAGAGGAAGAGGAAGTTTGTTTGCAAGTATTGCTTAAAGAGATTTCCATGTGGAAAATCTCTTGGTGGTCACATCAGAACCCACATGACTGAAGAAAGAACTCATGCTGCTGCTGCTGCTATTGCTGCTGCTGCTGCTGATATCAAGAGAGATTTTGAACCTGTTGTTGCTCTTAGTGATGGTGGAAATGGAAACCCTATTTATGGTCTTAGAGAGAATCCCAAGAAAACAATCAAGTTTGTGCATTCTCATAATCATGTTGCCTCTGCCGCCGCTGCAACCACTGCATTGGAACATGAAATGATCAAATTTTGCAAAGAATGTGGGAAAGGTTTTCCATCATTGAAAGCTCTTTGTGGTCACATGGCTTCTCATTCTGAGAAAGAGAAAAAGATCAAGGAGGATACTCAATCTGATGATGATGATGATGATGATGATACTTGTGTTGTTGCTGCTTCAACAATGAATCTAAGGAAAAATAAGAGAAGAATTAGGTTCAAGTCTCTTACTCTTTCAAACCAACCTTCTTCTTCGTCTGTTAATGGTTCTTCATCTGTTTCAGAGATGGAACAGGAACAAGAAGAGGTTGCTAGGTGTTTGATGTTATTGTCTAGAGATTTTTTTAGTCATAAGGGTCGTTTTGTTTCTGAATCTTCCAATAACAACTCGGTTCTTCTAGAGACCAAATCCAAGATTGTTATCAGAAATGGTAACAAACTTGTTTCTAGTAATGCTCATGGATTTGTTGAGGAGAAGAAGAAGCTGAAGTCTGTTGGTGGGATTGGTATTTCAATTAATTCGGATTCGACAGCTTTCAAATATGGTTCAAAGAAGATCAAAATTGTAGATTCAAATGTTTCAAAATACGAATTCAAGAGGCCAAAGATGGAAGAAGAAGATAAGTCTAGATTTGAGAATTGCAGAAAGAAAGCAAAATATGAAGAATTGGATCATGATAGGAAGTTTGATTCGAGAAAGAAAGCAAAATATGAAGAAATCTATGAGAGTGATAGAAAAAGTTTGAAATATGAGTTCTTTAGGAGTGAAAAAGACAAACATTGTTCTTATGATTCAATAACAGATGATGAGAGTGATGAACAAAAAAGTTCAGAAAGTGATTCTTTTTCTGCTGCAAAATCTCATAACAGTAAATTGGTGAATAAAAAGAAATCAAGCAACAAGGGTAAAAAGAAGAAGAAGTTGAAGTCAAAGAAAAGCAAAGAATATGAATGTCCAATTTGCTACAAAATTTTCAAGTCTGGACAAGCATTGGGAGGACATAAAAGATCACATTTTGTTGGAGGATCTGAAGACAACACTTTTGTGATCAAACAAAGTGTTGCTCCTTGTTTGATTGATCTTAATCAACCTGCTCCTGTTGATGAATAA 1395 0.3591 MEERKRKFVCKYCLKRFPCGKSLGGHIRTHMTEERTHAAAAAIAAAAADIKRDFEPVVALSDGGNGNPIYGLRENPKKTIKFVHSHNHVASAAAATTALEHEMIKFCKECGKGFPSLKALCGHMASHSEKEKKIKEDTQSDDDDDDDDTCVVAASTMNLRKNKRRIRFKSLTLSNQPSSSSVNGSSSVSEMEQEQEEVARCLMLLSRDFFSHKGRFVSESSNNNSVLLETKSKIVIRNGNKLVSSNAHGFVEEKKKLKSVGGIGISINSDSTAFKYGSKKIKIVDSNVSKYEFKRPKMEEEDKSRFENCRKKAKYEELDHDRKFDSRKKAKYEEIYESDRKSLKYEFFRSEKDKHCSYDSITDDESDEQKSSESDSFSAAKSHNSKLVNKKKSSNKGKKKKKLKSKKSKEYECPICYKIFKSGQALGGHKRSHFVGGSEDNTFVIKQSVAPCLIDLNQPAPVDE* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3708 464 SUPERFAMILY beta-beta-alpha zinc fingers 5 35 IPR036236 -
Tpr2g3708 464 Pfam C2H2-type zinc finger 8 32 - -
Tpr2g3708 464 Pfam C2H2-type zinc finger 107 129 - -
Tpr2g3708 464 Pfam C2H2-type zinc finger 411 433 - -
Tpr2g3708 464 ProSitePatterns Zinc finger C2H2 type domain signature. 413 433 IPR013087 -
Tpr2g3708 464 MobiDBLite consensus disorder prediction 359 374 - -
Tpr2g3708 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Tpr2g3708 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Tpr2g3708 464 MobiDBLite consensus disorder prediction 385 406 - -
Tpr2g3708 464 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Tpr2g3708 464 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 464 - -
Tpr2g3708 464 SUPERFAMILY beta-beta-alpha zinc fingers 106 433 IPR036236 -
Tpr2g3708 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 411 433 IPR013087 -
Tpr2g3708 464 SMART c2h2final6 411 433 IPR013087 -
Tpr2g3708 464 SMART c2h2final6 105 127 IPR013087 -
Tpr2g3708 464 SMART c2h2final6 8 30 IPR013087 -
Tpr2g3708 464 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Tpr2g3708 464 MobiDBLite consensus disorder prediction 359 409 - -
Tpr2g3708 464 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3708 Tpr-Chr2 40146924 40148436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3708 1 464 C2H2 Transcription Factor Family AT1G26610 38.933 8.93e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g3708 zf-C2H2_6 9.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3708 - - mtr:MTR_4g082980 447.973