Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3689 ATGAAAGAGGGTAACAAGAAGCAGGGTGCAGCTTCACCCTGTGCTGCATGTAAGCTTCTAAGAAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCTTATTTCCCTGCTGATGAGCCACATAAGTTTGCTAATGTTCATAAAGTCTTTGGTGCTAGTAATGTCAACAAGATGCTTCAGGACTTACCTGAACATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGACCCTGTTTATGGTTGTGTAGGGGCCATTTCGTCACTTCAGCAACAAATTGATGTGCTACAAACCCAATTGGCTGTGGCACAAGCTGAGGCAGTACACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAATAGTGCAGGGCATAGCCCTACTAGTCCAACCTATAGTGGCTCTCCATCATCCAAGATCAATGAATCACAAGCCAAACATATTTTTGATATGGACATGGTGGTGGTGGACCAAGATGGGTATGGTGGTGACTGGTGA 516 0.4516 MKEGNKKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQAKHIFDMDMVVVDQDGYGGDW* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3689 171 Coils Coil 92 112 - -
Tpr2g3689 171 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Tpr2g3689 171 MobiDBLite consensus disorder prediction 126 146 - -
Tpr2g3689 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 159 - -
Tpr2g3689 171 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Tpr2g3689 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3689 Tpr-Chr2 39992919 39998128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3689 1 131 AS2 family AT1G31320 85.496 2.98e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr2g3689 LOB 7.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3689 - - jre:108980655 264.618