Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3685 ATGGAAAGAGGCAGTTACAGAAACACAACCGCTGGCCGTGACGGTTATGGTGGTGGTCGTAGCGGTCATGGTGGTGGTGGTGGTAGAGGAAGAGAAAGAGAAAGAGAGTTTTATCCGCAACACCAATCAAGTGCCGGTAGTGGTGGTGGTGGCCGAGGGTTTCCTCAACAACCGCAAAATCGCTGGCAACAAAGGCCAAATCCACCATCCCCAGTCACCCACACAAGTTCATCTTCGGTTCTTCCTCATTTCAACATGCCAAACGACGGTCAACCCAAAGTCCGAACTCTTCCACTTCCCGATGGAGCTCCGAAATTGAAAGAGCAGAAAGTGGAAAATACAACAACTGGACCTATACGCCGGCCTGACAAGGGAGGGACGGTGTCAATTAGAAGCTGCAATCTTCGTGTGAATCATTTTCCGGTTACCTTCAATCCACAAAGCATTATTATGCACTACAATGTGGATGTGAGGGCTACCGTGCCACCAAAAAAGGGTTTGCCTCCAAAGAAGATTTCCAAGTCAGACTTGTCTATGATCAGGGACCAATTGTTTGCTGATCATCCTCAGACACTACCTTTGTTGAAGACTGCTTATGATGGAGAGAAAAGCATCTTTAGTGCTGTGCCATTGCCCGAAGAAACTTTTACTGTGGAGGTCTCGAAAGGAGAAGATGAAAGAGCTGTTTCTTATACAGTAACTATAACACTGGTGAACAAACTCGAGCTTCGCAAGTTGAGAGATTACCTTAGTTGCAGAGTCTATTCCATTCCGAGGGATATTTTACAGGGAATGGACTTGGTGGTGAAGGAGAATCCAACAAGGAGCACAATTGCTTTAGGAAGATATTTCTTTCCCAACAATCCTTCCATGGTGGAGAGGGGTCTTGAACCCGGAATAATTGCAATTGGAGGGTTTCAACATAGTCTCAAGACCACGGCTCAGGGTTTATCTTTGTGTCTTGACACTTCAGTTTTGTCTTTCCGAAAGAAAATGTCAGTCTTGGATTTCCTCCATGATCGTATTAGGGGTTTCAATTTGGCCGAGTTTTGGAAATATAAGAAAGCTGTCGAGGAGGAACTCCTTGGATTGAAAGTAAATGTCACTCACAGGAGAACCAAACAGAAATACACCATTGCTAGGTTAACACCTAAAGATACACGCCATATAACTTTCCCTATTTTGGGCGAAGATGGCCAAAACCTTCCTGGAAGCACCTCTCTTGTTGCCTACTTTAAACAAAAATATCGCATCAATATTGAATACAAAGATATTCCTGCCTTGGATTTTGGGGGAAACAAGACTAATTTTGTGCCTATGGAGCTATGTGTCTTGGTTGAGGGTCAGAGATATCCCAAAGAGTATTTGGACAAGAATGCTTCCAAGAACTTGAAAAATATGTGCTTGGCAAGTCCAAGGGAGAGGGAATCTACAATACAAATGATGATGAAGTCTGGTGATGGACCTTGCGGCGGTGGTATTCTTAAGAATTTTGGAATGAATGTCAAAACTTCCATGACAAATGTGACCGGACGCGTGATTGGGCCTCCAGCATTGAAGTTAAGTGATCCACGTGGAAGGAGTACTTCTGTCAAACTGGATGCAGAGAAATGCCATTGGAATCTAGTTGGAAGGTCAATGGTAGAAGGAAAACCTGTTGAGTGTTGGGGCATCCTTGATTTTACCAGCAATGGACCTAATTGGTGCAGATTAAGAGGCAATCAGTTCGTTGACAATCTTATGGATAAGTACCGAAAGTTGGGCATTGTCATGAAGGAACCTGTTTGTTATGAGCATTCTTCAATGCAGAAACTTGGGGATTACAATTCACTTAGTGACTTACTTGAAAAAATAAATGATAGGGTTCAAAAAAACTATCGACAGAGGCTGCAATTTCTTCTTTGTGTGATGGCCAACAGGGATCATGGTTATAAGTGCCTCAAGTGGATTGCTGAGACGAAGGTTGGCATAGTGACACAGTGCTGTTTATCTGGTAATGCTAATGAAGGGAAAGACCAATATCTCACAAATCTTGCTCTAAAAATCAATGCAAAAATTGGAGGCAGTAACGTGGAGCTCATTAATAGGCTCCCACACTTTAAGGATGAAAGTCCTGTTATGTTTATAGGGGCTGATGTCAATCATCCAGGCTCTCGGGACATAGATAGTCCATCCATTGCTGCGGTGGTTGCCACTACTAACTGGCCTGCTGCAAATCGCTATGCAGCACGTGTTTGCGCTCAAGAGCATCGGGTGGAGAAAATTGTGAATTTTGGAGAAGTTTGCCTTGACCTTGTTACACATTATGAGAAATCGAACAAAGTCAGACCCCAAAAAATTGTTATCTTTCGTGACGGTGTTAGTGAGAGTCAATTTGAAATGGTTCTTGCTCAGGAGTTGACAGATTTGAAGGCCGTTTTTCAGCGCTCGAATTACTTTCCAACTATCACTCTTATTGTAGCCCAAAAGCGACATCAAACTCGATTGTTTCCTACTGGTCCAAAGGAAGGGACTGGTAATGGCAATGTGTTCCCTGGAACAGTTGTGGACACAATGGTCGTACATCCTTTTGAATTTGATTTTTACCTTTGTAGTCACTATGGAAGCCTAGGTACAAGCAAACCCACTCACTATCATGTCTTGTGGGATGAGCACGAGTTTACTTCTGATGATTTGCAGAAGCTCATATATGATATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGATCTTGCTGCATATAGAGGAAGGCTATACTATGAAGCAAGGATGTCGGCACAATCTCCAGGTTCAGCTGTGTCTTCTTCATCATCACATTTAGCTTCTTCATCCTCTTCTTCCACCACCTCAATTTCAAATGATCCAGGGTTTTACAAGTTGCATCCTAATACGGAAAACAGAATGTTTTTCGTCTGA 2946 0.4318 MERGSYRNTTAGRDGYGGGRSGHGGGGGRGREREREFYPQHQSSAGSGGGGRGFPQQPQNRWQQRPNPPSPVTHTSSSSVLPHFNMPNDGQPKVRTLPLPDGAPKLKEQKVENTTTGPIRRPDKGGTVSIRSCNLRVNHFPVTFNPQSIIMHYNVDVRATVPPKKGLPPKKISKSDLSMIRDQLFADHPQTLPLLKTAYDGEKSIFSAVPLPEETFTVEVSKGEDERAVSYTVTITLVNKLELRKLRDYLSCRVYSIPRDILQGMDLVVKENPTRSTIALGRYFFPNNPSMVERGLEPGIIAIGGFQHSLKTTAQGLSLCLDTSVLSFRKKMSVLDFLHDRIRGFNLAEFWKYKKAVEEELLGLKVNVTHRRTKQKYTIARLTPKDTRHITFPILGEDGQNLPGSTSLVAYFKQKYRINIEYKDIPALDFGGNKTNFVPMELCVLVEGQRYPKEYLDKNASKNLKNMCLASPRERESTIQMMMKSGDGPCGGGILKNFGMNVKTSMTNVTGRVIGPPALKLSDPRGRSTSVKLDAEKCHWNLVGRSMVEGKPVECWGILDFTSNGPNWCRLRGNQFVDNLMDKYRKLGIVMKEPVCYEHSSMQKLGDYNSLSDLLEKINDRVQKNYRQRLQFLLCVMANRDHGYKCLKWIAETKVGIVTQCCLSGNANEGKDQYLTNLALKINAKIGGSNVELINRLPHFKDESPVMFIGADVNHPGSRDIDSPSIAAVVATTNWPAANRYAARVCAQEHRVEKIVNFGEVCLDLVTHYEKSNKVRPQKIVIFRDGVSESQFEMVLAQELTDLKAVFQRSNYFPTITLIVAQKRHQTRLFPTGPKEGTGNGNVFPGTVVDTMVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHEFTSDDLQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEARMSAQSPGSAVSSSSSHLASSSSSSTTSISNDPGFYKLHPNTENRMFFV* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3685 981 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 93 980 - -
Tpr2g3685 981 Pfam N-terminal domain of argonaute 131 268 IPR032474 -
Tpr2g3685 981 Pfam Piwi domain 634 930 IPR003165 GO:0003676
Tpr2g3685 981 SMART DUF1785_2 278 331 IPR014811 -
Tpr2g3685 981 MobiDBLite consensus disorder prediction 40 78 - -
Tpr2g3685 981 SMART Piwi_a_2 632 931 IPR003165 GO:0003676
Tpr2g3685 981 Gene3D - 700 981 IPR036397 GO:0003676
Tpr2g3685 981 SUPERFAMILY Ribonuclease H-like 616 931 IPR012337 -
Tpr2g3685 981 Pfam PAZ domain 351 460 IPR003100 GO:0005515
Tpr2g3685 981 MobiDBLite consensus disorder prediction 1 78 - -
Tpr2g3685 981 ProSiteProfiles Piwi domain profile. 632 931 IPR003165 GO:0003676
Tpr2g3685 981 ProSiteProfiles PAZ domain profile. 357 447 IPR003100 GO:0005515
Tpr2g3685 981 SMART PAZ_2_a_3 332 470 IPR003100 GO:0005515
Tpr2g3685 981 SUPERFAMILY PAZ domain 328 484 IPR036085 GO:0005515
Tpr2g3685 981 CDD PAZ_argonaute_like 332 446 - -
Tpr2g3685 981 CDD Piwi_ago-like 494 930 IPR045246 -
Tpr2g3685 981 Gene3D - 513 694 - -
Tpr2g3685 981 Gene3D paz domain 327 451 - -
Tpr2g3685 981 Pfam Argonaute linker 1 domain 280 330 IPR014811 -
Tpr2g3685 981 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 93 980 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3685 Tpr-Chr2 39943522 39947973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3685 18 958 Eukaryotic Initiation Factors Gene Family AT1G48410 33.367 9.26e-139 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3685 K11593 - gmx:100805250 1311.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3685 2 39943522 39947973 Tpr4g4331 4 50565206 50567852 PCT