Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3677 ATGGAATCGAATATCAACAACAATCGAGAGCAAATCGTAGACGTTGGATCAGTGGTTGAAGCTGTTTCTGCTGACGCCGGCGATGCACCGCTTTACACCCTCGAATCCCTCTGCATGCGTTGTCATCAAAATGGAACTACAAGGTTTTTATTTACTATAATTCCGAACTTCAGGAAGATTTTGTTGTCGGCTTTTGAATGTCCTCATTGTGGCGAGAGGAACAATGAAGTGCAGTTTGCTGGTGAAATTCAACCACGCGGTTGTTGTTACTCGCTAGAGATCCCAGCGGGTGAACAGAAGATGCTCAATCGCCAAGTGGTAAAATCAGAATCTGCTACCATTAAGATACCTGAACTCGATTTTGAAATTCCACCGGAGGCACAACGTGGTATTCTCTCAACGGTAGAAGGGATACTAACGCGAGCTGCCGATGAACTTCAAGCTCTACAAGAGGAACGCAGGAAAGTAGCTCCAGAGACGGCTGATGCGATTGATCAGTTCTTGGTGAAGTTGCAAGCCTGTGCAACATCAGAATTGTCCTTCACGTTTTTTATTGATGATCCTGCTGGAAATAGTTTCATTGAAAATCCGTTTGCACCGTCATCTGATCCATCACTGACGATAAAGTATTATGAGCGAACTCCTGAGCAACAAGCACTATTGGGGTACACACAGACTGAAGGAACTCGTGATGCAGCACCAGAAGGTGGAGAAGCTGTGGCTTCGAGGAGAACAAGGAGACAACCGCATGGGTCAGTTGGGGCAGCAGCCGGTCAGCGAGCCATTGCACAGAGTAATAGTGCAGAAATTGCAGATGCCTTATTTCGATATAGTGCACCAGAAGAGGTGATGACTTTCCCGTCTACCTGTGGAACTTGTGCCGCCAAGTGTGAAACTCGAATGTTTGTCACCAATATTCCATATTTTCAAGAAGTAATTGTTATGGCATCTACATGTGATGCTTGTGGTTACCGCAACTCTGAGGTGAAACCAGGTGGACGGATTCCTGAAAAGGGAAAAAAGATTACTCTTCATGTGAAAAATGTTAAGGACCTGAGCCGGGATGTGATTAAGTCTGATACTGCAAGTGTAATGGTTCCTGAACTTGACTTGGAGTTGGCCAGCGGCACTCTGGGAGGACTTGTTACAACTATTGAAGGTTTGATTACAAATATCAGTGGAAGCCTTGAAAAGGTCCATGGGTATAGTTTTGGAGATAGTCTTGAGGACCACAGAAAAAGCAAGTGGCTAGACTTTCAAACAAGGCTAAACAAGCTTCTTAGCTTGGATGAAGCCTGGACTCTAATTCTTGATGATGCATTGGCTAATTCTTTTGTAGCACCTGTAACTGATGATCTCAAAGACGACCATCAATTAACATTTGAGGAGTATGAGAGATCATGGGAGCAAAATGAAGAACTGGGACTGAATGATATGGACACCTCTTCTGCGGATGCTGCATATGAATCAACAAACACTACTAATACTGTGTGA 1494 0.4438 MESNINNNREQIVDVGSVVEAVSADAGDAPLYTLESLCMRCHQNGTTRFLFTIIPNFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEIPAGEQKMLNRQVVKSESATIKIPELDFEIPPEAQRGILSTVEGILTRAADELQALQEERRKVAPETADAIDQFLVKLQACATSELSFTFFIDDPAGNSFIENPFAPSSDPSLTIKYYERTPEQQALLGYTQTEGTRDAAPEGGEAVASRRTRRQPHGSVGAAAGQRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGTCAAKCETRMFVTNIPYFQEVIVMASTCDACGYRNSEVKPGGRIPEKGKKITLHVKNVKDLSRDVIKSDTASVMVPELDLELASGTLGGLVTTIEGLITNISGSLEKVHGYSFGDSLEDHRKSKWLDFQTRLNKLLSLDEAWTLILDDALANSFVAPVTDDLKDDHQLTFEEYERSWEQNEELGLNDMDTSSADAAYESTNTTNTV* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3677 497 Pfam ZPR1 zinc-finger domain 288 446 IPR004457 GO:0008270
Tpr2g3677 497 Pfam ZPR1 zinc-finger domain 36 195 IPR004457 GO:0008270
Tpr2g3677 497 PANTHER ZPR1 ZINC-FINGER DOMAIN PROTEIN 6 494 - -
Tpr2g3677 497 SMART zpr1 288 448 IPR004457 GO:0008270
Tpr2g3677 497 SMART zpr1 36 196 IPR004457 GO:0008270
Tpr2g3677 497 MobiDBLite consensus disorder prediction 224 259 - -
Tpr2g3677 497 Coils Coil 132 152 - -
Tpr2g3677 497 Gene3D ZPR1, A/B domain 334 476 IPR042451 -
Tpr2g3677 497 Gene3D ZPR1, A/B domain 82 223 IPR042451 -
Tpr2g3677 497 Gene3D ZPR1, zinc finger domain 278 333 IPR042452 -
Tpr2g3677 497 Gene3D ZPR1, zinc finger domain 28 81 IPR042452 -
Tpr2g3677 497 PANTHER ZINC FINGER PROTEIN ZPR1 6 494 IPR040141 -
Tpr2g3677 497 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 289 480 IPR004457 GO:0008270
Tpr2g3677 497 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 38 223 IPR004457 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3677 Tpr-Chr2 39858810 39871473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3677 5 494 C2H2 Transcription Factor Family AT5G22480 74.542 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3677 K06874 - gmx:100814878 843.573