Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3656 ATGCTTGATTCAGTTCTTTTTGCGCTTTTTCTTCCTTGTTTAGGAATGAGTTCAATTTTCATCGTCTACATGTGCCTTCTATGGTACACCACCACTCCTAATTATAACAACCGTGGTGGTGGTGGTTCTGATGGTACACCGCCGATTAAGCCGGTCACTGATAAGGGTCTCTCCCCTTTAGATCTTGAAAAGATACCTAAAATAACAGGTAAAGAATTGGTTGCGCCCACTGAATGCGCCGTTTGTCTCGACGAAATCGATATTGAACAGCCGGCTCGTCTGGTTCCAGGCTGTAATCACGCTTTTCATGTCCAATGTGCTGACACGTGGCTATCTAAACACCCTCTTTGTCCTCTCTGTAGATCCAAACTTGACCCTCAGATTCTCAATTCTGAAAGTCCCTGCTAA 408 0.4461 MLDSVLFALFLPCLGMSSIFIVYMCLLWYTTTPNYNNRGGGGSDGTPPIKPVTDKGLSPLDLEKIPKITGKELVAPTECAVCLDEIDIEQPARLVPGCNHAFHVQCADTWLSKHPLCPLCRSKLDPQILNSESPC* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3656 135 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 132 - -
Tpr2g3656 135 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 132 - -
Tpr2g3656 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 127 IPR013083 -
Tpr2g3656 135 Pfam Ring finger domain 78 121 IPR001841 -
Tpr2g3656 135 SUPERFAMILY RING/U-box 78 127 - -
Tpr2g3656 135 ProSiteProfiles Zinc finger RING-type profile. 79 121 IPR001841 -
Tpr2g3656 135 SMART ring_2 79 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3656 Tpr-Chr2 39650296 39651288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3656 1 135 C3H Transcription Factor Family AT5G42200 51.064 2.14e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3656 K19037 - gmx:100811160 217.624