Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3622 ATGGCCGGCGAGTTCGCCGGAGATAACACACCGGAGCTACTTTCTCTTGTTCACGATATTACCGGAATGTGTGTCGGAGGAGGCGGTTCTTCCTCCCTCACCGCCGATGCAATGTTCAGAAAAGATTGCACCGATCTAGTTCGCCGGATCTCTCTTTTATCTCATTTGTTTGAAGAGATTAAAGAATTGAATAAGGTTAACGGTTCTCCTTCAAGTTCTTCATCTACTGCTTTAGAGGATTCGTGGTCCTCTGATCTAGTTCTTGCTCTTCAATCTGCTAAACGGTTATTATCCGTAGCGAAGAATTTCAGTTCTAATTCTAATAATTCTTCTGATGGAGCTGCCAAGACTATTATCTTCCAATTTCAGTGCGTGACGTGGAAATTGGAAAAACTATTAAGCAGTTTACCGTATGACGATTTAGACATTTCAGTTGAAGTCAAAGAACAGGTGGATTTGGTGAGAACACAATTGAGACGGGCCACGGATAAATACGGGTTTATGATTTCTAAGATGCCGTCTTATGATTTATCCCAGCCCTTGGCCCAAGAAATCAGTCAAGTTCTTGGCAAATCTGTGAGTGGATTGCATAAACAACACAGTTGTCCTGAAAATCTATCAGAACTAGGCAGCATTCCTAAAAGCAATGAAGGGAAAAGCTGTAGCCCATGTGGGGCAGGATCTCGATTGGAAAGAACAAGGAGCATCCATGCCTCTTCTGAGGTTTCCTTATCGATTTTAACTGTTCCTAAAAGTCAAGAAATTTCTGGGAGCACCAATATACCTGAAGATAAAAAACCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGAGATCCTGTTATCGTGGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATTGATTGTGGAAATACAACCTGCCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTCTAAGGAGCCTTGTTTCTCAGTGGTGTATAGAGCACAACATTGAACAACCAACAGGACTAACCAATGGAAAAATAAAAAAGAGTGATGGATCATTCAGAGATGTTACAGGTGACATAGCGGCAATTGAAACTCTAGTCCGGAAGCTCTCCTGCAGGTCCATTGAGGAGTGTAGAGCAGCAGTTGCTGAAATTCGTTTATTATCCAAAAGAAGCACTGACAACAGGATACTAATTGCTGAAGCTGGGGCAATACCAGTTTTAGTCAACCTTTTAACTTCCGAAGATGTAATGACACAAGAAAATTCGGTTACATCAATTCTTAATCTTTCTATATATGAAAACAACAAAGGACTTATAATGCTTGCTGGTGCAATTCCATCCATTGTCCAAGTTCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCGGCAGCAACGCTTTTTAGCTTGTCACTTGCAGATGAGAACAAAATAATAATTGGAGCCTCAGGAGCTATATCCGCTTTGGTAGAATTGCTCGAAAATGGAAGCCCTAGAGGGAAGAAGGACGCAGCAACAGCACTGTTCAATTTATGCATATATCAAGGAAACAAGGGCAGAGCCATAAGAGCGGGGATCATCACAGCACTGTTGAAAATGCTGACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTTACAATTATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGCTACCATAGTAAAAGCCAGCACTATACCAGTTTTAATAGATCTTTTGAGGACGGGATTGCCTCGCAACAAAGAGAATGCAGCTGCCATTTTACTTGCTTTGTGCAAGAGGGATACTGATAATCTTTCCTGTATCAGTAGACTCGGTGCTGTCATACCCCTTTCTGAACTTGCTAGGACCGGTACAGAGAGAGCAAAAAGAAAGGCTACTTCACTATTGGAGCATCTTCGTAAGTTATAA 1947 0.4186 MAGEFAGDNTPELLSLVHDITGMCVGGGGSSSLTADAMFRKDCTDLVRRISLLSHLFEEIKELNKVNGSPSSSSSTALEDSWSSDLVLALQSAKRLLSVAKNFSSNSNNSSDGAAKTIIFQFQCVTWKLEKLLSSLPYDDLDISVEVKEQVDLVRTQLRRATDKYGFMISKMPSYDLSQPLAQEISQVLGKSVSGLHKQHSCPENLSELGSIPKSNEGKSCSPCGAGSRLERTRSIHASSEVSLSILTVPKSQEISGSTNIPEDKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLVSQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIETLVRKLSCRSIEECRAAVAEIRLLSKRSTDNRILIAEAGAIPVLVNLLTSEDVMTQENSVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAISALVELLENGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKATIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLSELARTGTERAKRKATSLLEHLRKL* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3622 648 SMART arm_5 524 564 IPR000225 GO:0005515
Tpr2g3622 648 SMART arm_5 442 482 IPR000225 GO:0005515
Tpr2g3622 648 SMART arm_5 483 523 IPR000225 GO:0005515
Tpr2g3622 648 SMART arm_5 401 441 IPR000225 GO:0005515
Tpr2g3622 648 SMART arm_5 565 605 IPR000225 GO:0005515
Tpr2g3622 648 Gene3D - 354 451 IPR011989 -
Tpr2g3622 648 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Tpr2g3622 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Tpr2g3622 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 453 495 IPR000225 GO:0005515
Tpr2g3622 648 Gene3D - 452 550 IPR011989 -
Tpr2g3622 648 Gene3D - 551 648 IPR011989 -
Tpr2g3622 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 535 577 IPR000225 GO:0005515
Tpr2g3622 648 SUPERFAMILY RING/U-box 267 346 - -
Tpr2g3622 648 PANTHER U BOX DOMAIN-CONTAINING 16 648 - -
Tpr2g3622 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Tpr2g3622 648 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Tpr2g3622 648 CDD RING-Ubox_PUB 276 318 IPR045210 -
Tpr2g3622 648 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Tpr2g3622 648 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 16 648 - -
Tpr2g3622 648 Pfam Armadillo/beta-catenin-like repeat 484 522 IPR000225 GO:0005515
Tpr2g3622 648 Pfam Armadillo/beta-catenin-like repeat 402 440 IPR000225 GO:0005515
Tpr2g3622 648 SUPERFAMILY ARM repeat 371 645 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3622 Tpr-Chr2 39294539 39297651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g3622 13 647 U-box Gene Family AT1G23030 61.224 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3622 - - gmx:100815448 1041.18